ZFIN ID: ZDB-GENE-030131-8373
Gene Name: collagen, type X, alpha 1a
Gene Symbol: col10a1a
Sequence Ontology ID : SO:0000704

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Previous Names: col10a1, fa66d11 (1), wu:fa66d11 (1), wu:fb10c08

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(Including Attributions)
Location: Chr: 17 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 59 figures from 40 publications
Wild-type Stages, Structures: Gastrula:75%-epiboly (8.0h-9.0h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
PHENOTYPE No data available
DISEASE ASSOCIATED WITH col10a1a HUMAN ORTHOLOG
Disease Ontology Term OMIM Term OMIM Phenotype ID
Schmid metaphyseal chondrodysplasia Metaphyseal chondrodysplasia, Schmid type 156500
DISEASE ASSOCIATED WITH col10a1a VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process fin regeneration (more)
Cellular Component collagen trimer (more)
GO Terms (all 3)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001073 (1)
  • InterPro:IPR008160 (1)
  • InterPro:IPR008983 (1)
  • PROSITE:PS50871 (1)
  • Pfam:PF00386 (1)
  • Pfam:PF01391 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA col10a1a-001 (1) 1779
    mRNA col10a1a-002 (1) 2639
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM col10a1a
    MARKER RELATIONSHIPS
    col10a1aContained in: [BAC] CH211-266G18 (1) (order this)
    col10a1aEncodes: [EST] fa66d11, fb10c08
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001083827 (1) 2620bp
    Genomic GenBank:CU306817 (1) 176617bp
    Select Tool
    Polypeptide UniProtKB:A2RQR3 (1) 655aa
    Sequence Clusters UniGene:38145 (1)
    Sequence Information (all 17)
    OTHER col10a1a GENE PAGES
  • Alliance (1)
  • Gene:558919 (1)
  • VEGA:OTTDARG00000035070 (1)
  • Ensembl(GRCz11):ENSDARG00000054753 (2)
  • ORTHOLOGY for col10a1a (Chr: 17)
    CITATIONS (88)