ZFIN ID: ZDB-GENE-030131-8195
Gene Name: pleckstrin and Sec7 domain containing 3, like
Gene Symbol: psd3l    Nomenclature History

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Names: fj59e03, wu:fj59e03

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 10 Mapping Details/Browsers
Description: Predicted to have ARF guanyl-nucleotide exchange factor activity and phospholipid binding activity. Predicted to be involved in regulation of ARF protein signal transduction. Is expressed in hypothalamus and telencephalon. Orthologous to human PSD3 (pleckstrin and Sec7 domain containing 3).
Genome Resources: Alliance (1),  Gene:559329 (1),  Ensembl(GRCz11):ENSDARG00000104820 (1)
GENE EXPRESSION
All Expression Data: 2 figures from Toro et al., 2009
Wild-type Stages, Structures: Pharyngula:Prim-5 (24.0h-30.0h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la011911Tg Transgenic Insertion Unknown Unknown DNA
la017617Tg Transgenic Insertion Unknown Unknown DNA
sa21644 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH psd3l HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH psd3l VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process regulation of ARF protein signal transduction (more)
    Molecular Function ARF guanyl-nucleotide exchange factor activity (more)
    GO Terms (all 3)
    PROTEIN FAMILIES, DOMAINS AND SITES
    Type InterPro ID Name
    Domain IPR000904 Sec7 domain
    Domain IPR001605 Pleckstrin homology domain, spectrin-type
    Domain IPR001849 Pleckstrin homology domain
    Homologous_superfamily IPR011993 PH-like domain superfamily
    Homologous_superfamily IPR023394 Sec7, C-terminal domain superfamily
    Homologous_superfamily IPR035999 Sec7 domain superfamily
    Domain IPR041681 Pleckstrin homology domain 9
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA psd3l-203 (1)    Ensembl 5460
    psd3l-204 (1)    Ensembl 750
    ncRNA psd3l-002 (1)    Ensembl 886
    psd3l-003 (1)    Ensembl 535
    Browsers: NCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM psd3l No data available
    MARKER RELATIONSHIPS
    psd3l Contained in: [BAC] CH73-133K20 (1), CH211-132E23, DKEYP-45E9 (1)
    psd3l Encodes: [EST] fj59e03
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_021479247 (1)
    Genomic GenBank:BX640592 186123 bp
    Select Tool
    Polypeptide UniProtKB:E7FAY0 (1) 961 aa
    Sequence Information (all 30)
    ORTHOLOGY for psd3l ( Chr: 10 )
    CITATIONS (19)