ZFIN ID: ZDB-GENE-030131-8187
Gene Name: solute carrier family 6 member 17
Gene Symbol: slc6a17    Nomenclature History

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Previous Names: fj59a05, si:dkey-71l10.2, wu:fj59a05

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 8 Mapping Details/Browsers
Description: Predicted to have neurotransmitter:sodium symporter activity. Predicted to be involved in neutral amino acid transport. Predicted to localize to the synaptic vesicle. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human SLC6A17 (solute carrier family 6 member 17).
Genome Resources: Alliance (1),  Gene:798635 (1),  Ensembl(GRCz11):ENSDARG00000068787 (1)
GENE EXPRESSION
Curated Microarray Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa11421 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH slc6a17 HUMAN ORTHOLOG
    Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
    Mental retardation, autosomal recessive 48 616269
    DISEASE ASSOCIATED WITH slc6a17 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process alanine transport (more)
    Cellular Component integral component of membrane (more)
    Molecular Function neurotransmitter:sodium symporter activity (more)
    GO Terms (all 10)
    PROTEIN FAMILIES, DOMAINS AND SITES
    Type InterPro ID Name
    Family IPR000175 Sodium:neurotransmitter symporter
    Family IPR002438 Neutral amino acid SLC6 transporter
    Homologous_superfamily IPR037272 Sodium:neurotransmitter symporter superfamily
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA slc6a17-201 (1)    Ensembl 3847
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM slc6a17 No data available
    MARKER RELATIONSHIPS
    slc6a17 Contained in: [BAC] DKEY-71L10 (1) (order this), DKEY-176G4 (1) (order this)
    slc6a17 Encodes: [EST] fj59a05
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001256724 (1) 2377 bp
    Genomic GenBank:BX324132 (1) 266430 bp Blast at MegaBLAST
    Polypeptide UniProtKB:A5WUQ3 (1) 732 aa
    Sequence Information (all 9)
    ORTHOLOGY for slc6a17 ( Chr: 8 )
    CITATIONS (16)