ZFIN ID: ZDB-GENE-030131-8049
Gene Name: transcription elongation factor A (SII), 1
Gene Symbol: tcea1    Nomenclature History

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Previous Names: fj48e12, wu:fj48e12, zgc:63975

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 2 Mapping Details/Browsers
Description: Predicted to have translation elongation factor activity and zinc ion binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to localize to the nucleus. Orthologous to human TCEA1 (transcription elongation factor A1).
Genome Resources: Alliance (1),  Gene:336105 (1),  Ensembl(GRCz11):ENSDARG00000003531 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:63975]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS No data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH tcea1 HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH tcea1 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process regulation of transcription, DNA-templated (more)
Cellular Component nucleus (more)
Molecular Function metal ion binding (more)
GO Terms (all 10)
PROTEIN FAMILIES, DOMAINS AND SITES
Type InterPro ID Name
Domain IPR001222 Zinc finger, TFIIS-type
Domain IPR003617 Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type
Domain IPR003618 Transcription elongation factor S-II, central domain
Family IPR006289 Transcription elongation factor, TFIIS
Domain IPR017923 Transcription factor IIS, N-terminal
Family IPR035100 Transcription elongation factor, IIS-type
Homologous_superfamily IPR035441 TFIIS/LEDGF domain superfamily
Homologous_superfamily IPR036575 Transcription elongation factor S-II, central domain superfamily
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA tcea1-201 (1)    Ensembl 1892
Browsers: UCSCNCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM tcea1 No data available
MARKER RELATIONSHIPS
tcea1 Contained in: [BAC] CH211-278C13 (1), DKEY-94E7 (1) (order this)
tcea1 Encodes: [EST] fj48e12, IMAGE:6910532 (1)
[cDNA] MGC:63975 (1), MGC:191925 (1)
SEQUENCE INFORMATION
Type Accession # Length (bp/aa) Analysis
RNA RefSeq:NM_199994 (1) 1597 bp
Genomic GenBank:AL929271 (1) 89488 bp
Select Tool
Polypeptide UniProtKB:A0A2R8Q7Y8 (1) 311 aa
Sequence Information (all 20)
ORTHOLOGY for tcea1 ( Chr: 2 )
CITATIONS (20)