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ZIRC
ZFIN ID: ZDB-GENE-030131-7120
Gene Name: chromodomain helicase DNA binding protein 1
Gene Symbol: chd1
Sequence Ontology ID : SO:0001217

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Previous Names: fc26h11, fk85d05, si:dkey-106m21.4, wu:fc26h11, wu:fk85d05 (1), zgc:173506

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(Including Attributions)
Location: Chr: 10 Mapping Details/Browsers
Nomenclature History
Note: corresponds to ENSDARG00000014878, Chr10
AUTOMATED DESCRIPTION
Predicted to have ATP binding activity. Predicted to localize to the nucleus. Human ortholog(s) of this gene implicated in prostate cancer. Orthologous to human CHD1 (chromodomain helicase DNA  ...
GENE EXPRESSION
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa5826 Point Mutation Unknown Premature Stop ENU
sa21667 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa34847 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH chd1 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    Pilarowski-Bjornsson syndrome 617682
    DISEASE ASSOCIATED WITH chd1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component nucleus (more)
    Molecular Function ATP binding (more)
    GO Terms (all 2)
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA chd1-002 (1) 807
    mRNA chd1-201 (1) 6860
     Withdrawn Transcriptsextinct
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM chd1 No data available
    MARKER RELATIONSHIPS
    chd1 Contained in: [BAC] DKEY-106M21 (1) (order this), DKEY-108M3 (1) (order this)
    chd1 Encodes: [EST] fc26h11, fk85d05
    [cDNA] MGC:173506 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001128298 (1) 1785 bp
    Genomic GenBank:CU302319 (1) 160878 bp
    Select Tool
    Polypeptide UniProtKB:A0A0R4IAE4 (1) 1777 aa
    Sequence Clusters UniGene:85309 (1)
    Sequence Information (all 19)
    ORTHOLOGY for chd1 ( Chr: 10 )
    CITATIONS (20)