ZFIN ID: ZDB-GENE-030131-7079
Gene Name: collagen, type X, alpha 1b
Gene Symbol: col10a1b    Nomenclature History

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Previous Name: wu:fk76c08 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 20 Mapping Details/Browsers
Description: Predicted to have extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Predicted to localize to extracellular matrix and extracellular space. Is expressed in ceratobranchial 5 tooth; dental papilla; and regenerating fin. Human ortholog(s) of this gene implicated in Schmid metaphyseal chondrodysplasia and osteochondrodysplasia. Orthologous to human COL10A1 (collagen type X alpha 1 chain).
Genome Resources: Alliance (1),  Gene:555804 (1),  Ensembl(GRCz11):ENSDARG00000101535 (1)
GENE EXPRESSION
All Expression Data: 3 figures from 2 publications
Wild-type Stages, Structures: Larval:Day 4 (96.0h-120.0h) to Adult (90d-730d, breeding adult)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS No data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH col10a1b HUMAN ORTHOLOG
Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
Schmid metaphyseal chondrodysplasia Alliance Metaphyseal chondrodysplasia, Schmid type 156500
DISEASE ASSOCIATED WITH col10a1b VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process extracellular matrix organization (more)
Cellular Component collagen trimer (more)
Molecular Function extracellular matrix structural constituent (more)
GO Terms (all 6)
PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
TRANSCRIPTS No data available
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM col10a1b No data available
MARKER RELATIONSHIPS
col10a1b Encodes: [EST] fk76c08
SEQUENCE INFORMATION
Type Accession # Length (nt/aa) Analysis
RNA RefSeq:XM_678423 (1)
Polypeptide UniProtKB:A0A0R4IAT5 (1) 659 aa
Sequence Information (all 8)
ORTHOLOGY for col10a1b ( Chr: 20 )
CITATIONS (15)