ZFIN ID: ZDB-GENE-030131-7036
Gene Name: protein tyrosine phosphatase, receptor type, U, b
Gene Symbol: ptprub
Sequence Ontology ID : SO:0000704

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Previous Names: ptpru, fj42a04, fk66g06, RPTP-psi (1), wu:fj42a04, wu:fk66g06 (1), zmp:0000001038 (1)

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(Including Attributions)
Location: Chr: 16 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 2 figures from 2 publications
Wild-type Stages, Structures: Segmentation:10-13 somites (14.0h-16.0h) to Pharyngula:Prim-5 (24.0h-30.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa9765 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa22899 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa42777 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • ws0148Tg Transgenic Insertion Intron 6 Unknown DNA
  • European Zebrafish Resource Center (EZRC) (order this)
  • Targeting reagents:
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH ptprub HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH ptprub VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process somite specification (more)
    Cellular Component integral component of membrane (more)
    Molecular Function transmembrane receptor protein tyrosine phosphatase activity (more)
    GO Terms (all 16)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000242 (1)
  • InterPro:IPR000387 (1)
  • InterPro:IPR000998 (1)
  • InterPro:IPR003595 (1)
  • InterPro:IPR003599 (1)
  • InterPro:IPR003961 (1)
  • InterPro:IPR013320 (1)
  • InterPro:IPR013783 (1)
  • InterPro:IPR016130 (1)
  • InterPro:IPR029021 (1)
  • InterPro:IPR036116 (1)
  • InterPro:IPR036179 (1)
  • PROSITE:PS00383 (1)
  • PROSITE:PS00740 (1)
  • PROSITE:PS50055 (1)
  • PROSITE:PS50056 (1)
  • PROSITE:PS50060 (1)
  • PROSITE:PS50853 (1)
  • Pfam:PF00041 (1)
  • Pfam:PF00102 (1)
  • Pfam:PF00629 (1)
  • EC:3.1.3.48 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA ottdart00000047741 (1) 434
     Withdrawn Transcriptsextinct
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM ptprub No data available
    MARKER RELATIONSHIPS
    ptprubContained in: [BAC] CH211-120E13 (1) (order this), CH211-200N15 (1) (order this), DKEY-164F21 (1) (order this)
    ptprubEncodes: [EST] fj42a04, fk66g06
    [cDNA] MGC:194790 (1) (order this), MGC:194809 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001002299 (1) 4562bp
    Genomic GenBank:BX004992 (1) 195432bp
    Select Tool
    Polypeptide UniProtKB:A0A286YB08 (1) 1450aa
    Sequence Clusters UniGene:20078 (1)
    Sequence Information (all 60)
    OTHER ptprub GENE PAGES
  • Alliance (1)
  • Gene:335096 (1)
  • VEGA:OTTDARG00000033866 (1)
  • Ensembl(GRCz11):ENSDARG00000101081 (1)
  • ORTHOLOGY for ptprub (Chr: 16)
    CITATIONS (27)