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ZIRC
ZFIN ID: ZDB-GENE-030131-698
Gene Name: scaffold attachment factor B
Gene Symbol: safb    Nomenclature History

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Previous Names: wu:fb40a03, wu:fd42g06, zgc:55387

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 22 Mapping Details/Browsers
Description: Predicted to have sequence-specific DNA binding activity. Predicted to be involved in regulation of mRNA processing and regulation of transcription by RNA polymerase II. Predicted to localize to the nucleus. Orthologous to several human genes including SAFB (scaffold attachment factor B).
Genome Resources: Alliance (1),  Gene:321979 (1),  Ensembl(GRCz11):ENSDARG00000020467 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:55387]
  1 figure (1 image) from Thisse et al., 2004 [IMAGE:6909873]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la022185Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa12825 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa32393 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH safb HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH safb VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process regulation of mRNA processing (more)
    Cellular Component nucleus (more)
    Molecular Function nucleic acid binding (more)
    GO Terms (all 7)
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA safb-201 (1)    Ensembl 3020
    safb-202 (1)    Ensembl 645
    ncRNA safb-002 (1) 843
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM safb No data available
    MARKER RELATIONSHIPS
    safb Contained in: [BAC] DKEY-114H6 (1) (order this), DKEYP-70F9 (1)
    safb Encodes: [EST] fb40a03, fd42g06 (1), IMAGE:6909873 (1) (order this)
    [cDNA] MGC:55387 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_214683 (1) 3029 bp
    Genomic GenBank:BX323550 (1) 200031 bp Blast at MegaBLAST
    Polypeptide UniProtKB:Q1LV81 (1) 855 aa
    Sequence Clusters UniGene:2918 (1)
    Sequence Information (all 19)
    ORTHOLOGY for safb ( Chr: 22 )
    CITATIONS (25)