ZFIN Gene: hnrnpub

ZFIN ID: ZDB-GENE-030131-6422

ZFIN ID: ZDB-GENE-030131-6422

Gene Name:

heterogeneous nuclear ribonucleoprotein Ub

Gene Symbol:

hnrnpub

Sequence Ontology ID :

SO:0001217

Previous Names:

hnrnpu, hnrpu (1), wu:fa66f11, wu:fc18b08, wu:fi89c08, zgc:111835, zgc:136480

Location:

Chr: 20 Mapping Details/Browsers

Nomenclature History

AUTOMATED DESCRIPTION

Predicted to have several functions, including basal RNA polymerase II transcription machinery binding activity; nucleic acid binding activity; and promoter-specific chromatin binding activity. ...

GENE EXPRESSION
Curated Microarray Expression:	GEO (1)

MUTATIONS AND SEQUENCE TARGETING REAGENTS

Allele	Type	Localization	Consequence	Mutagen	Suppliers
sa17952	Point Mutation	Unknown	Premature Stop	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa23760	Point Mutation	Unknown	Premature Stop	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa43492	Point Mutation	Unknown	Splice Site	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)

PHENOTYPE No data available

DISEASE ASSOCIATED WITH hnrnpub HUMAN ORTHOLOG

Disease Ontology Term	OMIM Term	OMIM Phenotype ID
early infantile epileptic encephalopathy 54	Epileptic encephalopathy, early infantile, 54	617391

DISEASE ASSOCIATED WITH hnrnpub VIA EXPERIMENTAL MODELS No data available

GENE ONTOLOGY

Ontology	GO Term
Biological Process	CRD-mediated mRNA stabilization (more)
Cellular Component	nucleus (more)
Molecular Function	poly(C) RNA binding (more)

GO Terms (all 37)

PROTEIN FAMILIES, DOMAINS AND SITES
InterPro:IPR001870 (1) InterPro:IPR003034 (1) InterPro:IPR003877 (1) InterPro:IPR013320 (1) InterPro:IPR026745 (1) InterPro:IPR027417 (1) InterPro:IPR035778 (1) InterPro:IPR036361 (1)	PROSITE:PS50188 (1) PROSITE:PS50800 (1)	Pfam:PF00622 (1) Pfam:PF02037 (1)

TRANSCRIPTS
Type	Name	Length (bp)	Analysis
ncRNA	hnrnpub-002 (1)	406	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	hnrnpub-202 (1)	4350	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

GENE PRODUCT DESCRIPTION No description available

INTERACTIONS AND PATHWAYS

ANTIBODIES No data available

PLASMIDS No data available

CONSTRUCTS WITH SEQUENCES FROM hnrnpub No data available

MARKER RELATIONSHIPS

hnrnpub Contained in:	[BAC] DKEYP-8F4 (1)
hnrnpub Encodes:	[EST] fa66f11 (1), fc18b08 (1), fi89c08 [cDNA] MGC:111835 (1) (order this), MGC:136480 (1) (order this)

SEQUENCE INFORMATION

Type	Accession #	Length (bp/aa)	Analysis
RNA	RefSeq:NM_001033595 (1)	3113 bp	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
Genomic	GenBank:BX470246 (1)	148286 bp	Select Tool MegaBLAST Ensembl
Polypeptide	UniProtKB:Q5RHQ7 (1)	796 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
Sequence Clusters	UniGene:75178 (1)

Sequence Information (all 31)

OTHER hnrnpub GENE PAGES

Alliance (1)

Gene:334490 (1)

VEGA:OTTDARG00000005736 (1)

Ensembl(GRCz11):ENSDARG00000004735 (2)

ORTHOLOGY for hnrnpub ( Chr: 20 )

CITATIONS (22)

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