ZFIN ID: ZDB-GENE-030131-6185
Gene Name: tripartite motif containing 35-27
Gene Symbol: trim35-27    Nomenclature History

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Previous Names: trim35 (1), wu:fi37h05, zgc:63737

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 14 Mapping Details/Browsers
Description: Predicted to have ubiquitin protein ligase activity. Predicted to be involved in innate immune response and protein ubiquitination. Predicted to localize to cytoplasm. Orthologous to human TRIM35 (tripartite motif containing 35).
Genome Resources: Alliance (1),  Gene:334253 (1),  Ensembl(GRCz11):ENSDARG00000035009 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:63737]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
High Throughput Expression: Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa35616 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa42319 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH trim35-27 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH trim35-27 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process protein ubiquitination (more)
    Cellular Component cytoplasm (more)
    Molecular Function metal ion binding (more)
    GO Terms (all 5)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA trim35-27-201 (1)    Ensembl 2122
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM trim35-27 No data available
    MARKER RELATIONSHIPS
    trim35-27 Contained in: [Fosmid] CH1073-458H17 (1)
    trim35-27 Encodes: [EST] fi37h05
    [cDNA] MGC:63737 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_199878 (1) 2372 nt
    Genomic GenBank:CU694755 (1) 35357 nt
    Select Tool
    Polypeptide UniProtKB:Q6PGW1 (1) 672 aa
    Sequence Information (all 12)
    ORTHOLOGY for trim35-27 ( Chr: 14 )
    CITATIONS (20)