ZFIN ID: ZDB-GENE-030131-6039
Gene Name: translin
Gene Symbol: tsn    Nomenclature History

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Previous Names: id:ibd2900 (1), wu:fb38b07, wu:fi31h02, zgc:123170 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 9 Mapping Details/Browsers
Description: Predicted to have endoribonuclease activity; sequence-specific DNA binding activity; and single-stranded DNA binding activity. Predicted to be involved in RNA metabolic process. Predicted to localize to the cytoplasm and nucleus. Is expressed in forebrain and midbrain. Orthologous to human TSN (translin).
Genome Resources: Alliance (1),  Gene:334107 (1),  Ensembl(GRCz11):ENSDARG00000041830 (1)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:110396]
  3 figures (3 images) from Kudoh et al., 2001 [ibd2900]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa13333 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH tsn HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH tsn VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process RNA metabolic process (more)
    Cellular Component nucleus (more)
    Molecular Function RNA binding (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES
    Type InterPro ID Name
    Family IPR002848 Translin family
    Family IPR033956 Translin
    Homologous_superfamily IPR016068 Translin, N-terminal
    Homologous_superfamily IPR016069 Translin, C-terminal
    Homologous_superfamily IPR036081 Translin superfamily
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA tsn-201 (1)    Ensembl 2359
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM tsn No data available
    MARKER RELATIONSHIPS
    tsn Contained in: [BAC] CH211-168M7 (1), DKEY-16P7 (1) (order this)
    tsn Contains: [SNP] rs3728224 (1)
    tsn Encodes: [EST] fb38b07 (1), fi31h02, ibd2900
    [cDNA] MGC:110396 (1), MGC:123170 (1), MGC:192514 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001025452 (1) 2340 nt
    Genomic GenBank:CR391905 (1) 221511 nt Blast at MegaBLAST
    Polypeptide UniProtKB:Q4V9N1 (1) 227 aa
    Sequence Information (all 22)
    ORTHOLOGY for tsn ( Chr: 9 )
    CITATIONS (23)