ZFIN ID: ZDB-GENE-030131-5964
Gene Name: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
Gene Symbol: smarca2
Sequence Ontology ID : SO:0000704

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Previous Names: wu:fa56c07, wu:fi27f11, zgc:66238

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(Including Attributions)
Location: Chr: 5 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
GENE EXPRESSION
Directly Submitted Expression Data: 7 figures (10 images) from Thisse et al., 2004 [MGC:66238]
  1 figure (1 image) from Thisse et al., 2004 [IMAGE:7157675]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la015707Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa2224 Point Mutation Unknown Premature Stop ENU
    sa20515 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa26560 Point Mutation Unknown Premature Stop ENU
    sa33690 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa33691 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH smarca2 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    Nicolaides-Baraitser syndrome 601358
    DISEASE ASSOCIATED WITH smarca2 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process chromatin remodeling (more)
    Cellular Component nucleus (more)
    Molecular Function ATPase activity (more)
    GO Terms (all 8)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000330 (1)
  • InterPro:IPR001487 (1)
  • InterPro:IPR001650 (1)
  • InterPro:IPR006576 (1)
  • InterPro:IPR014001 (1)
  • InterPro:IPR014012 (1)
  • InterPro:IPR014978 (1)
  • InterPro:IPR018359 (1)
  • InterPro:IPR027417 (1)
  • InterPro:IPR029295 (1)
  • InterPro:IPR030088 (1)
  • InterPro:IPR036427 (1)
  • InterPro:IPR037259 (1)
  • InterPro:IPR038718 (1)
  • PROSITE:PS00633 (1)
  • PROSITE:PS50014 (1)
  • PROSITE:PS51192 (1)
  • PROSITE:PS51194 (1)
  • PROSITE:PS51204 (1)
  • PROSITE:PS51666 (1)
  • Pfam:PF00176 (1)
  • Pfam:PF00271 (1)
  • Pfam:PF00439 (1)
  • Pfam:PF07529 (1)
  • Pfam:PF07533 (1)
  • Pfam:PF08880 (1)
  • Pfam:PF14619 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA smarca2-001 (1) 6051
    smarca2-002 (1) 663
    smarca2-003 (1) 823
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM smarca2 No data available
    MARKER RELATIONSHIPS
    smarca2Contained in: [BAC] CH211-130P8 (1) (order this), DKEYP-31E5 (1)
    smarca2Encodes: [EST] fa56c07, fi27f11, IMAGE:7157675 (1) (order this)
    [cDNA] MGC:66238 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001044775 (1) 6051bp
    Genomic GenBank:CR391913 (1) 190731bp
    Select Tool
    Polypeptide UniProtKB:A0A0R4IJ25 (1) 1604aa
    Sequence Clusters UniGene:93531 (1)
    Sequence Information (all 27)
    OTHER smarca2 GENE PAGES
  • Alliance (1)
  • Gene:334032 (1)
  • VEGA:OTTDARG00000011451 (1)
  • ORTHOLOGY for smarca2 (Chr: 5)
    CITATIONS (26)