ZFIN ID: ZDB-GENE-030131-5841
Gene Name: cold inducible RNA binding protein b
Gene Symbol: cirbpb    Nomenclature History

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Previous Names: cirbp, wu:fb12c11, wu:fi20g12, zgc:136559

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 22 Mapping Details/Browsers
Description: Predicted to have RNA binding activity. Involved in response to cold. Predicted to localize to spliceosomal complex. Is expressed in several structures, including gill; heart; liver; muscle; and pleuroperitoneal region. Orthologous to human CIRBP (cold inducible RNA binding protein).
Genome Resources: Alliance (1),  Gene:678563 (1),  Ensembl(GRCz11):ENSDARG00000013351 (2)
GENE EXPRESSION
All Expression Data: 3 figures from 3 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:55300]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Adult (90d-730d, breeding adult)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa24148 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH cirbpb HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH cirbpb VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process response to cold (more)
    Cellular Component spliceosomal complex (more)
    Molecular Function nucleic acid binding (more)
    GO Terms (all 5)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA cirbpb-201 (1)    Ensembl 1831
    cirbpb-202 (1)    Ensembl 1574
    cirbpb-203 (1)    Ensembl 643
    ncRNA cirbpb-006 (1)    Ensembl 2794
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM cirbpb No data available
    MARKER RELATIONSHIPS
    cirbpb Contained in: [BAC] CH211-285O15 (1)
    cirbpb Contains: [SNP] rs3729188 (1)
    cirbpb Encodes: [EST] fb12c11, fi20g12
    [cDNA] MGC:55300 (1), MGC:136559 (1), MGC:191197 (1)
    cirbpb Has Artifact: [cDNA] MGC:66205 (1), MGC:66406
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001040321 (1) 1583 nt
    Genomic GenBank:BX649404 (1) 154434 nt
    Select Tool
    Polypeptide UniProtKB:F1R6L3 (1) 224 aa
    Sequence Information (all 42)
    ORTHOLOGY for cirbpb ( Chr: 22 )
    CITATIONS (31)