ZFIN ID: ZDB-GENE-030131-5836
Gene Name: poly(A) binding protein, cytoplasmic 1-like
Gene Symbol: pabpc1l    Nomenclature History

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Previous Names: fi20g03, wu:fi20g03, zgc:55855 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 8 Mapping Details/Browsers
Description: Predicted to have mRNA 3'-UTR binding activity; poly(A) binding activity; and poly(U) RNA binding activity. Localizes to protein-containing complex. Orthologous to human PABPC1L (poly(A) binding protein cytoplasmic 1 like).
Genome Resources: Alliance (1),  Gene:327625 (1),  Ensembl(GRCz11):ENSDARG00000002597 (1)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:55855]
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa2423 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa16293 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa41286 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH pabpc1l HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH pabpc1l VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component protein-containing complex (more)
    Molecular Function protein binding (more)
    GO Terms (all 12)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA pabpc1l-202 (1)    Ensembl 1768
    pabpc1l-203 (1)    Ensembl 585
    pabpc1l-204 (1)    Ensembl 1766
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM pabpc1l No data available
    MARKER RELATIONSHIPS
    pabpc1l Contained in: [Fosmid] CH1073-323J3 (1)
    pabpc1l Encodes: [EST] fi20g03
    [cDNA] MGC:55855 (1), MGC:192558 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_199839 (1) 2256 nt
    Genomic GenBank:CABZ01066151 (1) 90292 nt
    Select Tool
    Polypeptide UniProtKB:Q6TGY6 (1) 620 aa
    Sequence Information (all 20)
    ORTHOLOGY for pabpc1l ( Chr: 8 )
    CITATIONS (26)