ZFIN ID: ZDB-GENE-030131-5809
Gene Name: peptidase (mitochondrial processing) alpha
Gene Symbol: pmpca
Sequence Ontology ID : SO:0000704

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Previous Names: wu:fi19e06, wu:fj83d11, zgc:101647

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(Including Attributions)
Location: Chr: 5 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
Directly Submitted Expression Data: 6 figures (12 images) from Thisse et al., 2004 [MGC:101647]
Wild-type Stages, Structures: Segmentation:1-4 somites (10.33h-11.66h) to Hatching:Long-pec (48.0h-60.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa20571 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH pmpca HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    autosomal recessive spinocerebellar ataxia 2 Spinocerebellar ataxia, autosomal recessive 2 213200
    DISEASE ASSOCIATED WITH pmpca VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process protein processing involved in protein targeting to mitochondrion (more)
    Cellular Component mitochondrial inner membrane (more)
    Molecular Function catalytic activity (more)
    GO Terms (all 7)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001431 (1)
  • InterPro:IPR007863 (1)
  • InterPro:IPR011249 (1)
  • InterPro:IPR011765 (1)
  • InterPro:IPR037715 (1)
  • PROSITE:PS00143 (1)
  • Pfam:PF00675 (1)
  • Pfam:PF05193 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA pmpca-001 (1) 2226
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM pmpca No data available
    MARKER RELATIONSHIPS
    pmpcaContained in: [BAC] CH73-348L8 (1) (order this)
    pmpcaEncodes: [EST] fi19e06, fj83d11 (1)
    [cDNA] MGC:101647 (1) (order this), MGC:192774 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001007442 (1) 2233bp
    Genomic GenBank:CU570890 (1) 82299bp
    Select Tool
    Polypeptide UniProtKB:A0A0R4IFK9 (1) 517aa
    Sequence Clusters UniGene:115139 (1)
    Sequence Information (all 17)
    OTHER pmpca GENE PAGES
  • Alliance (1)
  • Gene:492801 (1)
  • VEGA:OTTDARG00000029219 (1)
  • Ensembl(GRCz11):ENSDARG00000102607 (1)
  • ORTHOLOGY for pmpca (Chr: 5)
    CITATIONS (19)