ZFIN ID: ZDB-GENE-030131-5725
Gene Name: AT rich interactive domain 1Ab (SWI-like)
Gene Symbol: arid1ab
Previous Names: fi15b05, fb82h08, im:7160733, si:dkey-180c19.1, wu:fb82h08, wu:fi15b05
Location: Chr: 19   Details
Nomenclature History
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:7160733]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
  whole organism
Curated Microarray Expression: GEO (1)
MUTANTS AND TARGETED KNOCKDOWNS
Mutant lines: 1 genotype
Alleles: la028032Tg, sa11863, sa125, sa13031, sa13632 (all 6) expand
Knockdown reagents: MO1-arid1ab (1)
PHENOTYPE
Phenotype of Human Orthologue OMIM Phenotype ID
Mental retardation, autosomal dominant 14 614607
GENE ONTOLOGY
Ontology GO Term
Biological Process chromatin remodeling (more)
Cellular Component BAF-type complex (more)
Molecular Function DNA binding (more)
GO Terms (all 5)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001606 (1)
  • InterPro:IPR021906 (1)
  • PROSITE:PS51011 (1)
  • Pfam:PF01388 (1)
  • Pfam:PF12031 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA arid1ab-001 (1) 6303
    ncRNA arid1ab-002 (1) 475
    GENE PRODUCT DESCRIPTION
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM arid1ab No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    arid1ab Contained in: [BAC] DKEY-180C19 (1)
    arid1ab Encodes: [EST] fb82h08, fi15b05, IMAGE:7160733 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_009294131 (1) 8458 bp
    Genomic GenBank:CT027837 (1) 195174 bp
    Select Tool
    Polypeptide UniProtKB:A5WVV1 (1) 2101 aa
    Sequence Clusters UniGene:92043 (1)
    Sequence Information (all 28)
    OTHER arid1ab GENE PAGES
  • Gene:568161 (1)
  • VEGA:OTTDARG00000023431 (1)
  • Ensembl(Zv9):ENSDARG00000060073 (1)
  • ORTHOLOGY
      Evidence
    Species Symbol Chr (Position) Accession # AA CL
    Zebrafish arid1ab 19  
    Human ARID1A 1 (1p35.3)
  • OMIM:603024
  • Gene:8289
  • Mouse Arid1a 4 ( 66.25 cM)
  • MGI:1935147
  • Gene:93760
  • Orthology Details
    CITATIONS (17)