ZFIN ID: ZDB-GENE-030131-5725
Gene Name: AT rich interactive domain 1Ab (SWI-like)
Gene Symbol: arid1ab
Previous Names: fb82h08, fi15b05, im:7160733, si:dkey-180c19.1, wu:fb82h08, wu:fi15b05
Location: Chr: 19 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:7160733]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
  whole organism
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la028032Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa125 Point Mutation Unknown Unknown ENU
    sa9694 Point Mutation Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa11863 Point Mutation Unknown Unknown ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • European Zebrafish Resource Center (EZRC) (order this)
  • sa13031 Point Mutation Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa13632 Point Mutation Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents: MO1-arid1ab (1)
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH arid1ab HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    autosomal dominant non-syndromic intellectual disability Coffin-Siris syndrome 2 614607
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process chromatin remodeling (more)
    Cellular Component BAF-type complex (more)
    Molecular Function DNA binding (more)
    GO Terms (all 3)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001606 (1)
  • InterPro:IPR021906 (1)
  • InterPro:IPR030094 (1)
  • InterPro:IPR033388 (1)
  • PROSITE:PS51011 (1)
  • Pfam:PF01388 (1)
  • Pfam:PF12031 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA arid1ab-001 (1) 6303
    ncRNA arid1ab-002 (1) 475
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYSNo data available
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM arid1ab No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    arid1abContained in: [BAC] DKEY-180C19 (1) (order this)
    arid1abEncodes: [EST] fb82h08, fi15b05, IMAGE:7160733 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_009294131 (1) 8466bp
    Genomic GenBank:CT027837 (1) 195174bp
    Select Tool
    Polypeptide UniProtKB:A0A0R4IR17 (1) 2101aa
    Sequence Clusters UniGene:145049 (1)
    Sequence Information (all 27)
    OTHER arid1ab GENE PAGES
  • Gene:568161 (1)
  • VEGA:OTTDARG00000023431 (1)
  • Ensembl(GRCz10):ENSDARG00000101891 (1)
  • ORTHOLOGY for arid1ab (Chr: 19)
    Species Symbol Chromosome Accession # Evidence
    Human ARID1A 1
  • Gene:8289
  • OMIM:603024
  • HGNC:11110
  • Amino acid sequence comparison (1)
    Conserved genome location (synteny) (1)
    Mouse Arid1a 4
  • MGI:1935147
  • Gene:93760
  • Amino acid sequence comparison (1)
    Conserved genome location (synteny) (1)
    Download Curated Orthology
    CITATIONS (16)