ZFIN ID: ZDB-GENE-030131-5725
Gene Name: AT rich interactive domain 1Ab (SWI-like)
Gene Symbol: arid1ab
Sequence Ontology ID : SO:0000704

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Previous Names: fb82h08, fi15b05, im:7160733, si:dkey-180c19.1, wu:fb82h08, wu:fi15b05

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(Including Attributions)
Location: Chr: 19 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:7160733]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
  whole organism
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la028032Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa125 Point Mutation Unknown Unknown ENU
    sa325 Point Mutation Unknown Premature Stop ENU
    sa9694 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa11863 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa13031 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa13632 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents: CRISPR1-arid1ab (2), CRISPR2-arid1ab (2), CRISPR3-arid1ab (2), CRISPR4-arid1ab (2), CRISPR5-arid1ab (2) (all 11) expand
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH arid1ab HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    autosomal dominant non-syndromic intellectual disability Coffin-Siris syndrome 2 614607
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process chromatin remodeling (more)
    Cellular Component SWI/SNF superfamily-type complex (more)
    Molecular Function DNA binding (more)
    GO Terms (all 4)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001606
  • InterPro:IPR021906
  • InterPro:IPR030094
  • InterPro:IPR033388
  • PROSITE:PS51011
  • Pfam:PF01388
  • Pfam:PF12031
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA arid1ab-001 (1) 6303
    ncRNA arid1ab-002 (1) 475
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM arid1ab No data available
    MARKER RELATIONSHIPS
    arid1abContained in: [BAC] DKEY-180C19 (1) (order this)
    arid1abEncodes: [EST] fb82h08, fi15b05, IMAGE:7160733 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_021468300 (1) 8460bp
    Genomic GenBank:CT027837 (1) 195174bp
    Select Tool
    Polypeptide UniProtKB:A0A0R4IR17 2101aa
    Sequence Clusters UniGene:145049 (1)
    Sequence Information (all 27)
    OTHER arid1ab GENE PAGES
  • Gene:568161 (1)
  • VEGA:OTTDARG00000023431 (1)
  • Ensembl(GRCz10):ENSDARG00000101891 (1)
  • ORTHOLOGY for arid1ab (Chr: 19)
    CITATIONS (18)