Research
General Information
ZIRC
ZFIN ID: ZDB-GENE-030131-5725
Gene Name: AT rich interactive domain 1Ab (SWI-like)
Gene Symbol: arid1ab
Previous Names: fi15b05, fb82h08, im:7160733, si:dkey-180c19.1, wu:fb82h08, wu:fi15b05
Location: Chr: 19   Details
Nomenclature History
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:7160733]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
  whole organism
Curated Microarray Expression: GEO (1)
MUTANTS AND TARGETED KNOCKDOWNS
Mutant lines: 1 genotype
Alleles: la028032Tg, sa11863, sa125, sa13031, sa13632 (all 6) expand
PHENOTYPE
Phenotype of Human Orthologue OMIM Phenotype ID
Mental retardation, autosomal dominant 14 614607
GENE ONTOLOGY
Ontology GO Term
Biological Process chromatin remodeling (more)
Cellular Component BAF-type complex (more)
Molecular Function DNA binding (more)
GO Terms (all 5)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001606 (1)
  • InterPro:IPR021906 (1)
  • PROSITE:PS51011 (1)
  • Pfam:PF01388 (1)
  • Pfam:PF12031 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA arid1ab-001 (1) 6303
    ncRNA arid1ab-002 (1) 475
    GENE PRODUCT DESCRIPTION
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM arid1ab No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    arid1ab Contained in: [BAC] DKEY-180C19 (1)
    arid1ab Encodes: [EST] fb82h08, fi15b05, IMAGE:7160733 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_009294131 (1) 8458 bp
    Genomic GenBank:CT027837 (1) 195174 bp
    Select Tool
    Polypeptide UniProtKB:A5WVV1 (1) 2101 aa
    Sequence Clusters UniGene:92043 (1)
    Sequence Information (all 28)
    OTHER arid1ab GENE PAGES
  • Gene:568161 (1)
  • VEGA:OTTDARG00000023431 (1)
  • Ensembl(Zv9):ENSDARG00000060073 (1)
  • ORTHOLOGY
      Evidence
    Species Symbol Chr (Position) Accession # AA CL
    Zebrafish arid1ab 19  
    Human ARID1A 1 (1p35.3)
  • OMIM:603024
  • Gene:8289
  • Mouse Arid1a 4 ( 66.25 cM)
  • MGI:1935147
  • Gene:93760
  • Orthology Details
    CITATIONS (17)