ZFIN ID: ZDB-GENE-030131-5553
Gene Name: chromobox homolog 5 (HP1 alpha homolog, Drosophila)
Gene Symbol: cbx5    Nomenclature History

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Previous Names: fc63e02, id:ibd2026, wu:fc63e02, wu:fe47g12, wu:fi03h05, zgc:158601

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 23 Mapping Details/Browsers
Description: Predicted to localize to nucleus. Is expressed in somite. Orthologous to human CBX5 (chromobox 5).
Genome Resources: Alliance (1),  Gene:563396 (1),  Ensembl(GRCz11):ENSDARG00000061187 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 2 figures (2 images) from Kudoh et al., 2001 [ibd2026]
  1 figure (1 image) from Thisse et al., 2004 [IMAGE:6909494]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Sequence Targeting Reagents
Targeting Reagent Created Alleles Publications
MO1-cbx5 N/A 1
PHENOTYPE No data available
DISEASE ASSOCIATED WITH cbx5 HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH cbx5 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Cellular Component nucleus (more)
GO Terms (all 1)
PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA cbx5-202 (1)    Ensembl 775
cbx5-203 (1)    Ensembl 1028
cbx5-204 (1)    Ensembl 1264
cbx5-205 (1)    Ensembl 2989
cbx5-206 (1)    Ensembl 759
cbx5-207 (1)    Ensembl 818
Browsers: UCSCNCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM cbx5 No data available
MARKER RELATIONSHIPS
cbx5 Contained in: [BAC] DKEY-174K1 (1) (order this)
cbx5 Encodes: [EST] fc63e02, fe47g12, fi03h05, ibd2026, IMAGE:6909494 (1)
[cDNA] MGC:158601 (1), MGC:191470 (1)
SEQUENCE INFORMATION
Type Accession # Length (nt/aa) Analysis
RNA RefSeq:NM_001080184 (1) 1884 nt
Genomic GenBank:BX571773 (1) 135439 nt
Select Tool
Polypeptide UniProtKB:A1L223 (1) 204 aa
Sequence Information (all 27)
ORTHOLOGY for cbx5 ( Chr: 23 )
CITATIONS (25)