ZFIN ID: ZDB-GENE-030131-5278
Gene Name: PHD finger protein 6
Gene Symbol: phf6    Nomenclature History

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Previous Names: wu:fa22g03, zgc:55403

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 14 Mapping Details/Browsers
Description: Predicted to have DNA-binding transcription repressor activity, RNA polymerase II-specific; histone binding activity; and histone deacetylase binding activity. Predicted to localize to nucleoplasm. Human ortholog(s) of this gene implicated in Borjeson-Forssman-Lehmann syndrome. Orthologous to human PHF6 (PHD finger protein 6).
Genome Resources: Alliance (1),  Gene:327070 (1),  Ensembl(GRCz11):ENSDARG00000004046 (1)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:55403]
  1 figure (1 image) from Thisse et al., 2004 [IMAGE:7140111]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la018958Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa13009 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-phf6 N/A 1
    TALEN1-phf6
    1
    TALEN2-phf6
    1
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH phf6 HUMAN ORTHOLOG
    Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
    Borjeson-Forssman-Lehmann syndrome Alliance Borjeson-Forssman-Lehmann syndrome 301900
    DISEASE ASSOCIATED WITH phf6 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component nucleoplasm (more)
    Molecular Function metal ion binding (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA phf6-201 (1)    Ensembl 1920
    phf6-202 (1)    Ensembl 884
    phf6-204 (1)    Ensembl 810
    phf6-205 (1)    Ensembl 926
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM phf6 No data available
    MARKER RELATIONSHIPS
    phf6 Contained in: [BAC] DKEY-100E19 (1) (order this)
    phf6 Encodes: [EST] fa22g03, IMAGE:7140111 (1)
    [cDNA] MGC:55403 (1), MGC:191938 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_199765 (1) 1802 nt
    Genomic GenBank:BX511227 (1) 262038 nt Blast at MegaBLAST
    Polypeptide UniProtKB:F1QPB3 (1) 363 aa
    Sequence Information (all 24)
    ORTHOLOGY for phf6 ( Chr: 14 )
    CITATIONS (26)