ZFIN ID: ZDB-GENE-030131-5143
Gene Name: PRP4 pre-mRNA processing factor 4 homolog (yeast)
Gene Symbol: prpf4
Sequence Ontology ID : SO:0000704

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Previous Names: mg:ab03a02, zgc:65943

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(Including Attributions)
Location: Chr: 5 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 2 figures from 2 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:65943]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa33729 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • tsu243Tg Transgenic Insertion Unknown Unknown DNA
  • China Zebrafish Resource Center (CZRC, ZKO consortium) (order this)
  • tsu5is Indel Unknown Unknown CRISPR
    Targeting reagents:
    PHENOTYPE
    Data: 3 figures from 3 publications
    Observed in:
    DISEASE ASSOCIATED WITH prpf4 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    retinitis pigmentosa 70 Retinitis pigmentosa 70 615922
    DISEASE ASSOCIATED WITH prpf4 VIA EXPERIMENTAL MODELS
    Human Disease Fish Conditions Citations
    retinitis pigmentosa WT + MO1-prpf4 standard conditions Linder et al., 2011
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process chordate embryonic development (more)
    Cellular Component U4/U6 x U5 tri-snRNP complex (more)
    Molecular Function U4 snRNA binding (more)
    GO Terms (all 7)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001680 (1)
  • InterPro:IPR014906 (1)
  • InterPro:IPR015943 (1)
  • InterPro:IPR017986 (1)
  • InterPro:IPR019775 (1)
  • InterPro:IPR020472 (1)
  • InterPro:IPR027106 (1)
  • InterPro:IPR036285 (1)
  • InterPro:IPR036322 (1)
  • PROSITE:PS00678 (1)
  • PROSITE:PS50082 (1)
  • PROSITE:PS50294 (1)
  • Pfam:PF00400 (1)
  • Pfam:PF08799 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA prpf4-001 (1) 1812
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM prpf4 No data available
    MARKER RELATIONSHIPS
    prpf4Contained in: [BAC] CH211-69I3 (1) (order this), CH211-202F5 (1) (order this)
    prpf4Contains: [SNP] rs3727904 (1), rs3727905 (1), rs3727906 (1), rs3727907 (1)
    prpf4Encodes: [EST] ab03a02
    [cDNA] MGC:65943 (1) (order this), MGC:174498 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_199755 (1) 1820bp
    Genomic GenBank:CR925761 (1) 97258bp
    Select Tool
    Polypeptide UniProtKB:Q6PH45 (1) 507aa
    Sequence Clusters UniGene:76045 (1)
    Sequence Information (all 17)
    OTHER prpf4 GENE PAGES
  • Alliance (1)
  • Gene:326944 (1)
  • VEGA:OTTDARG00000018655 (1)
  • ORTHOLOGY for prpf4 (Chr: 5)
    CITATIONS (22)