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General Information
ZIRC
ZFIN ID: ZDB-GENE-030131-5107
Gene Name: high mobility group 20A
Gene Symbol: hmg20a
Sequence Ontology ID : SO:0000704

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Attributions

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Previous Names: fe47h11, wu:fe47h11, zgc:162335

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(Including Attributions)
Location: Chr: 25 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have DNA binding activity. Predicted to localize to the nucleus. Orthologous to human HMG20A (high mobility group 20A).
GENE EXPRESSION
All Expression Data: Fig. S1 from O'Hare et al., 2016
Wild-type Stages, Structures: Pharyngula:Prim-5 (24.0h-30.0h) to Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Targeting reagents:
PHENOTYPE No data available
DISEASE ASSOCIATED WITH hmg20a HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH hmg20a VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Cellular Component nucleus (more)
Molecular Function DNA binding (more)
GO Terms (all 2)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR009071 (1)
  • InterPro:IPR036910 (1)
  • PROSITE:PS50118 (1)
  • Pfam:PF00505 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA hmg20a-201 (1) 1478
    hmg20a-202 (1) 836
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM hmg20a No data available
    MARKER RELATIONSHIPS
    hmg20aContained in: [BAC] DKEY-7N16 (1) (order this)
    hmg20aEncodes: [EST] fe47h11
    [cDNA] MGC:162335 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001089334 (1) 1361bp
    Genomic GenBank:BX005076 (1) 207084bp Blast at MegaBLAST
    Polypeptide UniProtKB:A3KNQ1 (1) 291aa
    Sequence Clusters UniGene:7178 (1)
    Sequence Information (all 16)
    ORTHOLOGY for hmg20a (Chr: 25)
    CITATIONS (17)