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ZIRC
ZFIN ID: ZDB-GENE-030131-4459
Gene Name: AT rich interactive domain 1B (SWI1-like)
Gene Symbol: arid1b    Nomenclature History

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Previous Names: fd07d11, si:dkey-60a16.3, wu:fd07d11

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 20 Mapping Details/Browsers
Description: Predicted to have DNA binding activity. Predicted to be involved in chromatin remodeling. Predicted to localize to the SWI/SNF complex and nBAF complex. Human ortholog(s) of this gene implicated in Coffin-Siris syndrome; Coffin-Siris syndrome 1; intellectual disability; and neuroblastoma. Orthologous to human ARID1B (AT-rich interaction domain 1B).
Genome Resources: Alliance (1),  Gene:569589 (1),  Ensembl(GRCz11):ENSDARG00000092503 (2)
GENE EXPRESSION No data available
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa8523 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa43376 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • y607 Small Deletion Unknown Frameshift, Premature Stop CRISPR
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-arid1b N/A 1
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH arid1b HUMAN ORTHOLOG
    Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
    Coffin-Siris syndrome 1 Alliance Coffin-Siris syndrome 1 135900
    DISEASE ASSOCIATED WITH arid1b VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process chromatin remodeling (more)
    Cellular Component brahma complex (more)
    Molecular Function DNA binding (more)
    GO Terms (all 11)
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA arid1b-201 (1)    Ensembl 8791
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM arid1b
    Construct Regulatory Regions Coding Sequences Species Tg Lines Publications
    TgBAC(arid1b:Citrine) arid1b Citrine Danio rerio 1 2
    MARKER RELATIONSHIPS
    arid1b Contained in: [BAC] DKEY-60A16 (1) (order this)
    arid1b Encodes: [EST] fd07d11
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001346214 (1)
    Genomic GenBank:BX649499 (1) 201391 bp Blast at MegaBLAST
    Polypeptide UniProtKB:A0A0R4ISW4 (1) 2122 aa
    Sequence Clusters UniGene:75729 (1)
    Sequence Information (all 26)
    ORTHOLOGY for arid1b ( Chr: 20 )
    CITATIONS (22)