ZFIN ID: ZDB-GENE-030131-445
Gene Name: retinoblastoma binding protein 4
Gene Symbol: rbbp4
Sequence Ontology ID : SO:0000704

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Previous Names: rbb4, wu:fb33a09, wu:fb40e10, zgc:55349, zgc:77854

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(Including Attributions)
Location: Chr: 19 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
GENE EXPRESSION
All Expression Data: 15 figures from 4 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:77854]
  1 figure (1 image) from Thisse et al., 2004 [IMAGE:7146730]
  8 figures (11 images) from Rauch et al., 2003 [fc32h01]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
is60 Small Deletion Unknown Unknown CRISPR
sa15025 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa23554 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH rbbp4 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH rbbp4 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process fin regeneration (more)
    Cellular Component CAF-1 complex (more)
    Molecular Function CONTRIBUTES_TO DNA-dependent ATPase activity (more)
    GO Terms (all 10)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001680 (1)
  • InterPro:IPR015943 (1)
  • InterPro:IPR017986 (1)
  • InterPro:IPR019775 (1)
  • InterPro:IPR020472 (1)
  • InterPro:IPR022052 (1)
  • InterPro:IPR036322 (1)
  • PROSITE:PS00678 (1)
  • PROSITE:PS50082 (1)
  • PROSITE:PS50294 (1)
  • Pfam:PF00400 (1)
  • Pfam:PF12265 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA rbbp4-001 (1) 2116
    ncRNA rbbp4-002 (1) 2220
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM rbbp4 No data available
    MARKER RELATIONSHIPS
    rbbp4Contained in: [BAC] DKEYP-25A3 (1)
    rbbp4Contains: [SNP] rs3728987 (1), rs3728988 (1)
    rbbp4Encodes: [EST] fb33a09, fb40e10, fc32h01 (1) (order this), IMAGE:7146730 (1) (order this)
    [cDNA] MGC:55349 (1) (order this), MGC:77854 (1) (order this), MGC:174472 (1) (order this), MGC:192933 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_212595 (1) 2038bp
    Genomic GenBank:BX465206 (1) 161014bp
    Select Tool
    Polypeptide UniProtKB:B2GTD3 (1) 424aa
    Sequence Clusters UniGene:76462 (1)
    Sequence Information (all 31)
    OTHER rbbp4 GENE PAGES
  • Alliance (1)
  • Gene:321726 (1)
  • VEGA:OTTDARG00000016019 (1)
  • Ensembl(GRCz11):ENSDARG00000029058 (2)
  • ORTHOLOGY for rbbp4 (Chr: 19)
    CITATIONS (35)