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ZIRC
ZFIN ID: ZDB-GENE-030131-4400
Gene Name: collagen, type I, alpha 1b
Gene Symbol: col1a1b
Sequence Ontology ID : SO:0000704

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Previous Names: col1a3, alpha3(I) (1), fj59a10, hm:zeh0348, wu:fa95h05, wu:fd02a10, wu:fj59a10

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(Including Attributions)
Location: Chr: 12 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have extracellular matrix structural constituent. Involved in skeletal system development. Predicted to localize to the collagen type III trimer and extracellular space. Human  ...
GENE EXPRESSION
All Expression Data: 16 figures from 7 publications
Directly Submitted Expression Data: 7 figures (11 images) from Thisse et al., 2004 [MGC:77441]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
dmh29 Point Mutation Unknown Nonsynonymous ENU
sa12931 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa41934 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa45443 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • DISEASE ASSOCIATED WITH col1a1b HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    Caffey disease Caffey disease 114000
    osteogenesis imperfecta type 1 Osteogenesis imperfecta, type I 166200
    osteogenesis imperfecta type 2 Osteogenesis imperfecta, type II 166210
    osteogenesis imperfecta type 3 Osteogenesis imperfecta, type III 259420
    osteogenesis imperfecta type 4 Osteogenesis imperfecta, type IV 166220
    osteoporosis {Bone mineral density variation QTL, osteoporosis} 166710
    Ehlers-Danlos syndrome, arthrochalasia type, 1 130060
    Ehlers-Danlos syndrome, arthrochalasia type, 1 130060
    DISEASE ASSOCIATED WITH col1a1b VIA EXPERIMENTAL MODELS
    Human Disease Fish Conditions Citations
    osteogenesis imperfecta col1a1bdmh29/+ standard conditions Gistelinck et al., 2018
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process skeletal system development (more)
    Cellular Component collagen trimer (more)
    Molecular Function extracellular matrix structural constituent (more)
    GO Terms (all 7)
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA col1a1b-201 (1) 5610
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM col1a1b No data available
    MARKER RELATIONSHIPS
    col1a1bContained in: [BAC] CH211-190L11 (1) (order this)
    col1a1bEncodes: [EST] fa95h05 (1), fj59a10 (1), zeh0348 (1)
    [cDNA] MGC:65877 (1) (order this), MGC:77441 (1) (order this)
    col1a1bHas Artifact: [EST] fd02a05, fd02a10
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_201478 (1) 5603bp
    Genomic GenBank:BX548040 (1) 147855bp
    Select Tool
    Polypeptide UniProtKB:F1QDL1 (1) 1449aa
    Sequence Clusters UniGene:73918 (1)
    Sequence Information (all 26)
    ORTHOLOGY for col1a1b (Chr: 12)
    CITATIONS (50)