ZFIN ID: ZDB-GENE-030131-415
Gene Name: sodium channel modifier 1
Gene Symbol: scnm1    Nomenclature History

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Previous Names: fb30c06, wu:fb30c06, zgc:123015

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 16 Mapping Details/Browsers
Description: Predicted to have metal ion binding activity. Predicted to be involved in alternative mRNA splicing, via spliceosome. Predicted to localize to nuclear speck.
Genome Resources: Alliance (1),  Gene:321696 (1),  Ensembl(GRCz11):ENSDARG00000003027 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:6905046]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
High Throughput Expression: GEO (1) Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa14725 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa42749 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH scnm1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH scnm1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process alternative mRNA splicing, via spliceosome (more)
    Cellular Component nuclear speck (more)
    Molecular Function metal ion binding (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA scnm1-201 (1)    Ensembl 1342
    scnm1-202 (1)    Ensembl 1652
    ncRNA scnm1-003 (1) 224
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM scnm1 No data available
    MARKER RELATIONSHIPS
    scnm1 Contained in: [BAC] CH211-203D17 (1)
    scnm1 Encodes: [EST] fb30c06, IMAGE:6905046 (1)
    [cDNA] MGC:123015 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001001813 (1) 1666 nt
    Genomic GenBank:CT954330 (1) 69840 nt
    Select Tool
    Polypeptide UniProtKB:Q2YDS5 (1) 249 aa
    Sequence Information (all 18)
    ORTHOLOGY for scnm1 ( Chr: 16 )
    CITATIONS (24)