ZFIN ID: ZDB-GENE-030131-405
Gene Name: KH domain containing 4, pre-mRNA splicing factor
Gene Symbol: khdc4    Nomenclature History

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Previous Names: kiaa0907, si:zfos-1192g2.2, wu:fb26g02

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 16 Mapping Details/Browsers
Description: Predicted to have RNA binding activity. Predicted to be involved in mRNA splice site selection. Predicted to colocalize with spliceosomal complex. Orthologous to human KHDC4 (KH domain containing 4, pre-mRNA splicing factor).
Genome Resources: Alliance (1),  Gene:321686 (1),  Ensembl(GRCz11):ENSDARG00000035023 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:55537]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS No data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH khdc4 HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH khdc4 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process mRNA splice site selection (more)
Cellular Component cytoplasm (more)
Molecular Function RNA binding (more)
GO Terms (all 7)
PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA khdc4-201 (1)    Ensembl 2044
ncRNA kiaa0907-002 (1)    Ensembl 722
kiaa0907-003 (1)    Ensembl 861
Browsers: UCSCNCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM khdc4 No data available
MARKER RELATIONSHIPS
khdc4 Contained in: [Fosmid] ZFOS-1192G2 (1)
khdc4 Encodes: [EST] fb26g02
[cDNA] MGC:55537 (1), MGC:77386 (1)
SEQUENCE INFORMATION
Type Accession # Length (nt/aa) Analysis
RNA RefSeq:NM_212593 (1) 2096 nt
Genomic GenBank:CU861504 (1) 40847 nt
Select Tool
Polypeptide UniProtKB:F1QQM1 (1) 570 aa
Sequence Information (all 37)
ORTHOLOGY for khdc4 ( Chr: 16 )
CITATIONS (20)