ZFIN ID: ZDB-GENE-030131-3729
Gene Name: solute carrier family 6 member 11a
Gene Symbol: slc6a11a    Nomenclature History

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Previous Names: fa11f11, slc6a11, fc51c07, wu:fa11f11, wu:fc51c07

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 6 Mapping Details/Browsers
Description: Predicted to have gamma-aminobutyric acid:sodium symporter activity and neurotransmitter binding activity. Predicted to localize to the neuron projection and plasma membrane. Is expressed in ectoderm. Orthologous to several human genes including SLC6A12 (solute carrier family 6 member 12).
Genome Resources: Alliance (1),  Gene:558960 (1),  Ensembl(GRCz11):ENSDARG00000074002 (2)
GENE EXPRESSION
All Expression Data: 2 figures from 2 publications
Wild-type Stages, Structures: Segmentation:14-19 somites (16.0h-19.0h) to Segmentation:14-19 somites (16.0h-19.0h)
 
Curated Microarray Expression: GEO (1) , Expression Atlas (1)
PHENOTYPE No data available
DISEASE ASSOCIATED WITH slc6a11a HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH slc6a11a VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Cellular Component integral component of membrane (more)
Molecular Function neurotransmitter:sodium symporter activity (more)
GO Terms (all 8)
PROTEIN FAMILIES, DOMAINS AND SITES
Type InterPro ID Name
Family IPR000175 Sodium:neurotransmitter symporter
Homologous_superfamily IPR037272 Sodium:neurotransmitter symporter superfamily
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA slc6a11a-201 (1)    Ensembl 2533
Browsers: UCSCNCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM slc6a11a No data available
MARKER RELATIONSHIPS
slc6a11a Contained in: [BAC] DKEY-177P8 (1) (order this)
slc6a11a Encodes: [EST] fa11f11, fc51c07
[cDNA] MGC:162194 (1)
SEQUENCE INFORMATION
Type Accession # Length (bp/aa) Analysis
RNA RefSeq:NM_001098387 (1) 2571 bp
Genomic GenBank:CU855953 (1) 86932 bp
Select Tool
Polypeptide UniProtKB:A5D8R6 (1) 590 aa
Sequence Information (all 13)
ORTHOLOGY for slc6a11a ( Chr: 6 )
CITATIONS (22)