ZFIN ID: ZDB-GENE-030131-3658
Gene Name: si:dkey-222f8.3
Gene Symbol: si:dkey-222f8.3    Nomenclature History

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Previous Names: fc48g01, wu:fc48g01

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 4 Mapping Details/Browsers
Description: Predicted to have endoribonuclease activity. Is expressed in several structures, including EVL; mucus secreting cell; nervous system; periderm; and vasculature.
Genome Resources: Alliance (1),  Gene:561722 (1),  Ensembl(GRCz11):ENSDARG00000058366 (2)

Nomenclature Note: This gene is derived from the zebrafish genome sequencing and annotation project. When more is known about the gene, the current nomenclature will be replaced with more traditional zebrafish gene nomenclature. The prefix 'si:' indicates that this gene is represented by annotated genomic sequence from the Sanger Institute.

MUTATIONS AND SEQUENCE TARGETING REAGENTS No data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH si:dkey-222f8.3 HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH si:dkey-222f8.3 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Molecular Function endoribonuclease activity (more)
GO Terms (all 1)
PROTEIN FAMILIES, DOMAINS AND SITES
Type InterPro ID Name
Domain IPR018998 EndoU ribonuclease, C-terminal
Family IPR039787 Poly(U)-specific endoribonuclease
Homologous_superfamily IPR037227 Endoribonuclease EndoU-like
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA si:dkey-222f8.3-201 (1)    Ensembl 1716
si:dkey-222f8.3-203 (1)    Ensembl 748
ncRNA si:dkey-222f8.3-002 (1)    Ensembl 765
Browsers: UCSCNCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM si:dkey-222f8.3 No data available
MARKER RELATIONSHIPS
si:dkey-222f8.3 Contained in: [BAC] DKEY-222F8 (1) (order this)
si:dkey-222f8.3 Encodes: [EST] fc48g01, IMAGE:6897333 (1)
[cDNA] MGC:162382 (1), MGC:194917 (1), MGC:194921 (1)
SEQUENCE INFORMATION
Type Accession # Length (nt/aa) Analysis
RNA RefSeq:NM_001044967 (1) 1716 nt
Genomic GenBank:BX005210 (1) 207949 nt Blast at MegaBLAST
Polypeptide UniProtKB:A4VCG0 (1) 290 aa
Sequence Information (all 25)
ORTHOLOGY for si:dkey-222f8.3 ( Chr: 4 )
CITATIONS (19)