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ZIRC
ZFIN ID: ZDB-GENE-030131-3264
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Gene Name: fermitin family member 1
Gene Symbol: fermt1
Sequence Ontology ID : SO:0001217

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Previous Names: fc32b07, kindlin-1 (1), si:ch73-22c10.1, wu:fc32b07 (1)

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(Including Attributions)
Location: Chr: 20 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to be involved in integrin-mediated signaling pathway. Human ortholog(s) of this gene implicated in Kindler syndrome; telangiectasis; and vesiculobullous skin disease. Is expressed in  ...
GENE EXPRESSION
All Expression Data: 2 figures from 2 publications
Wild-type Stages, Structures: Gastrula:75%-epiboly (8.0h-9.0h) to Larval:Protruding-mouth (72.0h-96.0h, 3.5mm)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
hu8654 Point Mutation Exon 13 Unknown ENU
sa11922 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa23801 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa37147 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • Targeting reagents:
    PHENOTYPE
    Data: 2 figures from Postel et al., 2013
    Observed in:
    DISEASE ASSOCIATED WITH fermt1 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    Kindler syndrome Kindler syndrome 173650
    DISEASE ASSOCIATED WITH fermt1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process integrin-mediated signaling pathway (more)
    GO Terms (all 1)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001849 (1)
  • InterPro:IPR011993 (1)
  • InterPro:IPR019748 (1)
  • InterPro:IPR019749 (1)
  • InterPro:IPR035963 (1)
  • InterPro:IPR037843 (1)
  • InterPro:IPR040790 (1)
  • PROSITE:PS50003 (1)
  • Pfam:PF00169 (1)
  • Pfam:PF00373 (1)
  • Pfam:PF18124 (1)
    • TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA fermt1-002 (1) 859
    Select Tool
    mRNA fermt1-203 (1) 415
    Select Tool
    fermt1-204 (1) 2566
    Select Tool
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM fermt1 No data available
    MARKER RELATIONSHIPS
    fermt1 Contained in: [BAC] CH73-22C10 (1) (order this)
    fermt1 Encodes: [EST] fc32b07
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_002665785 (1)
    Select Tool
    Genomic GenBank:CU861505 (1) 91433 bp
    Select Tool
    Polypeptide UniProtKB:E9QBZ4 (1) 661 aa
    Select Tool
    Sequence Clusters UniGene:158706 (1)
    Sequence Information (all 19)
    OTHER fermt1 GENE PAGES
  • Alliance (1)
  • Gene:100332544 (1)
  • VEGA:OTTDARG00000032256 (1)
  • Ensembl(GRCz11):ENSDARG00000052652 (2)
    • ORTHOLOGY for fermt1 ( Chr: 20 )
    CITATIONS (16)