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General Information
ZIRC
ZFIN ID: ZDB-GENE-030131-3165
Gene Name: procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1a
Gene Symbol: plod1a
Sequence Ontology ID : SO:0000704

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Previous Names: lh1 (1), plod1, plod (1), fc95g08, fi18a05, ik:tdsubs_rzpd609-29b19, wu:fc29c10, wu:fc95g08 (1), wu:fi18a05, zgc:152876

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(Including Attributions)
Location: Chr: 8 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have procollagen-lysine 5-dioxygenase activity; involved in fin morphogenesis; predicted to localize to the collagen trimer and endoplasmic reticulum; orthologous to human PLOD1  ...
GENE EXPRESSION
All Expression Data: 5 figures from 3 publications
Wild-type Stages, Structures: Gastrula:Shield (6.0h-8.0h) to Hatching:Long-pec (48.0h-60.0h)
 
Curated Microarray Expression: GEO (1)
DISEASE ASSOCIATED WITH plod1a HUMAN ORTHOLOG
Disease Ontology Term OMIM Term OMIM Phenotype ID
Ehlers-Danlos syndrome, kyphoscoliotic type, 1 225400
Ehlers-Danlos syndrome, kyphoscoliotic type, 1 225400
DISEASE ASSOCIATED WITH plod1a VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process fin development (more)
Cellular Component collagen trimer (more)
Molecular Function dioxygenase activity (more)
GO Terms (all 14)
TRANSCRIPTS
Type Name Length (bp) Analysis
ncRNA plod1a-003 (1) 406
mRNA plod1a-201 (1) 2767
aberrant processed transcript plod1a-203 (1) 664
GENE PRODUCT DESCRIPTION No description available
INTERACTIONS AND PATHWAYS
ANTIBODIESNo data available
PLASMIDSNo data available
CONSTRUCTS WITH SEQUENCES FROM plod1a No data available
MARKER RELATIONSHIPS
plod1aContained in: [BAC] DKEYP-104H9 (1)
plod1aContains: [SNP] rs3728187 (1), rs3728188 (1), rs3728189 (1), rs3728190 (1), rs3728191 (1), rs3728192 (1), rs3728193 (1)
plod1aEncodes: [EST] fc29c10, fc95g08, fi18a05 (1), tdsubs_rzpd609-29b19
[cDNA] MGC:152876 (1)
SEQUENCE INFORMATION
Type Accession # Length (bp/aa) Analysis
RNA RefSeq:NM_001077742 (1) 2765bp
Genomic GenBank:BX548250 (1) 165603bp
Select Tool
Polypeptide UniProtKB:A0JMD1 (1) 730aa
Sequence Clusters UniGene:104353 (1)
Sequence Information (all 22)
ORTHOLOGY for plod1a (Chr: 8)
CITATIONS (35)