ZFIN ID: ZDB-GENE-030131-3148
Gene Name: high mobility group AT-hook 2
Gene Symbol: hmga2
Sequence Ontology ID : SO:0000704

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Previous Names: wu:fc27f12, wu:fc28f02, wu:fc57d12, zgc:77719

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Location: Chr: 4 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have DNA-(apurinic or apyrimidinic site) endonuclease activity; predicted to be involved in base-excision repair and regulation of transcription, DNA-templated; predicted to localize to  ...
GENE EXPRESSION
All Expression Data: 7 figures from 2 publications
Directly Submitted Expression Data: 6 figures (17 images) from Thisse et al., 2004 [MGC:77719]
Wild-type Stages, Structures: Segmentation:14-19 somites (16.0h-19.0h) to Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
ct29aGt Transgenic Insertion Unknown Unknown DNA
Targeting reagents:
PHENOTYPE No data available
DISEASE ASSOCIATED WITH hmga2 HUMAN ORTHOLOG
Disease Ontology Term OMIM Term OMIM Phenotype ID
uterine fibroid Leiomyoma, uterine, somatic 150699
DISEASE ASSOCIATED WITH hmga2 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process regulation of transcription, DNA-templated (more)
Cellular Component chromatin (more)
Molecular Function DNA binding (more)
GO Terms (all 7)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000116 (1)
  • InterPro:IPR000637 (1)
  • InterPro:IPR017956 (1)
  • PROSITE:PS00354 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA hmga2-001 (1) 1415
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM hmga2 No data available
    MARKER RELATIONSHIPS
    hmga2Contained in: [BAC] DKEY-6A5 (1) (order this), DKEY-150I15 (1) (order this)
    hmga2Encodes: [EST] fc27f12 (1), fc28f02, fc57d12
    [cDNA] MGC:77719 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_212680 (1) 1398bp
    Genomic GenBank:BX119963 (1) 229125bp Blast at MegaBLAST
    Polypeptide UniProtKB:Q6P038 (1) 110aa
    Sequence Clusters UniGene:106063 (1)
    Sequence Information (all 21)
    OTHER hmga2 GENE PAGES
  • Alliance (1)
  • Gene:324428 (1)
  • VEGA:OTTDARG00000007870 (1)
  • Ensembl(GRCz11):ENSDARG00000069912 (2)
  • ORTHOLOGY for hmga2 (Chr: 4)
    CITATIONS (24)