Gene

rbm4.2

ID

ZDB-GENE-030131-3019

Name

RNA binding motif protein 4.2

Symbol

rbm4.2 Nomenclature History

Previous Names

rbm4l
wu:fc25a01

Type

protein_coding_gene

Location

Chr: 7 Mapping Details/Browsers

Description

Predicted to have mRNA binding activity. Predicted to be involved in mRNA cis splicing, via spliceosome and regulation of alternative mRNA splicing, via spliceosome. Predicted to localize to nuclear speck. Orthologous to several human genes including RBM4 (RNA binding motif protein 4).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

MGC:55830 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With rbm4.2 Human Ortholog

No data available

Associated With rbm4.2 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000504	RNA recognition motif domain
Domain	IPR001878	Zinc finger, CCHC-type
Family	IPR050502	Eukaryotic RNA-binding
Homologous_superfamily	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
Homologous_superfamily	IPR035979	RNA-binding domain superfamily
Homologous_superfamily	IPR036875	Zinc finger, CCHC-type superfamily

Domain Details Per Protein

Protein	Length	Eukaryotic RNA-binding	Nucleotide-binding alpha-beta plait domain superfamily	RNA-binding domain superfamily	RNA recognition motif domain	Zinc finger, CCHC-type	Zinc finger, CCHC-type superfamily
UniProtKB:F1Q7F8 InterPro	384
UniProtKB:Q803F7 InterPro	385
UniProtKB:A0A8M9PNZ5 InterPro	141

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	rbm4.2-201 (1) Ensembl	Ensembl	2,029 nt	Select Tool ZFIN BLAST
mRNA	rbm4.2-202 (1) Ensembl	Ensembl	2,575 nt	Select Tool
mRNA	rbm4.2-205 (1) Ensembl	Ensembl	2,054 nt	Select Tool
ncRNA	rbm4.2-003 (1) Ensembl	Ensembl	1,036 nt	Select Tool
ncRNA	rbm4.2-004 (1) Ensembl	Ensembl	1,036 nt	(2 sequences)

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations