ZFIN ID: ZDB-GENE-030131-2768
Gene Name: CCR4-NOT transcription complex, subunit 6a
Gene Symbol: cnot6a    Nomenclature History

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Names: cnot6, wu:fa03c11, wu:fc17f01, zgc:65822 (1)

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 21 Mapping Details/Browsers
Description: Predicted to have poly(A)-specific ribonuclease activity. Predicted to be involved in nuclear-transcribed mRNA poly(A) tail shortening. Predicted to localize to CCR4-NOT complex; cytoplasm; and nucleus. Orthologous to human CNOT6 (CCR4-NOT transcription complex subunit 6).
Genome Resources: Alliance (1),  Gene:324048 (1),  Ensembl(GRCz11):ENSDARG00000008255 (1)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:65822]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la028356Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa415 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa1905 Point Mutation Unknown Splice Site ENU
    sa43683 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH cnot6a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH cnot6a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process nuclear-transcribed mRNA poly(A) tail shortening (more)
    Cellular Component CCR4-NOT complex (more)
    Molecular Function 3'-5'-exoribonuclease activity (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA cnot6a-201 (1)    Ensembl 4284
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM cnot6a No data available
    MARKER RELATIONSHIPS
    cnot6a Contained in: [BAC] DKEY-28J24 (1) (order this)
    cnot6a Encodes: [EST] fa03c11 (1), fc17f01
    [cDNA] MGC:65822 (1)
    cnot6a Has Artifact: [cDNA] MGC:56390
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_212660 (1) 3143 nt
    Genomic GenBank:BX511225 (1) 256675 nt Blast at MegaBLAST
    Polypeptide UniProtKB:Q7ZU49 (1) 566 aa
    Sequence Information (all 19)
    ORTHOLOGY for cnot6a ( Chr: 21 )
    CITATIONS (27)