ZFIN ID: ZDB-GENE-030131-271
Gene Name: slow myosin heavy chain 1
Gene Symbol: smyhc1
Sequence Ontology ID : SO:0000704

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Previous Names: smhc1 (1), fb18g10, im:6897999, wu:fb18g10

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(Including Attributions)
Location: Chr: 24 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 97 figures from 42 publications
Directly Submitted Expression Data: 12 figures (16 images) from Rauch et al., 2003 [fb18g10]
  7 figures (37 images) from Thisse et al., 2004 [IMAGE:6897999]
Wild-type Stages, Structures: Segmentation:1-4 somites (10.33h-11.66h) to Juvenile:Days 30-44 (30d-45d, 10 mm, adult fins/pigment)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa12384 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa24569 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa30154 Point Mutation Unknown Premature Stop ENU
    sa30155 Point Mutation Unknown Splice Site ENU
    sa30156 Point Mutation Unknown Premature Stop ENU
    sa37966 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE
    Data: 5 figures from 2 publications
    Observed in:
    DISEASE ASSOCIATED WITH smyhc1 HUMAN ORTHOLOG No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process slow-twitch skeletal muscle fiber contraction (more)
    Cellular Component myosin complex (more)
    Molecular Function actin binding (more)
    GO Terms (all 12)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000048 (1)
  • InterPro:IPR001609 (1)
  • InterPro:IPR002928 (1)
  • InterPro:IPR004009 (1)
  • InterPro:IPR008989 (1)
  • InterPro:IPR027401 (1)
  • InterPro:IPR027417 (1)
  • InterPro:IPR036961 (1)
  • PROSITE:PS50096 (1)
  • PROSITE:PS51456 (1)
  • Pfam:PF00063 (1)
  • Pfam:PF01576 (1)
  • Pfam:PF02736 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA smyhc1-001 (1) 6575
    smyhc1-002 (1) 516
    ncRNA smyhc1-003 (1) 705
    smyhc1-004 (1) 830
    smyhc1-005 (1) 700
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM smyhc1
    MARKER RELATIONSHIPS
    smyhc1Contained in: [BAC] CH211-24N20 (1) (order this)
    smyhc1Encodes: [EST] fb18g10 (order this), IMAGE:6897999 (1) (order this)
    [cDNA] MGC:194801 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001020507 (1) 5905bp
    Genomic GenBank:CU929259 (1) 195306bp
    Select Tool
    Polypeptide UniProtKB:A0A0R4IVW7 (1) 1939aa
    Sequence Clusters UniGene:161747 (1)
    Sequence Information (all 35)
    OTHER smyhc1 GENE PAGES
  • Alliance (1)
  • Gene:321552 (1)
  • VEGA:OTTDARG00000034809 (1)
  • Ensembl(GRCz10):ENSDARG00000099959 (1)
  • ORTHOLOGY for smyhc1 (Chr: 24)
    CITATIONS (91)