ZFIN ID: ZDB-GENE-030131-2585
Gene Name: nuclear RNA export factor 1
Gene Symbol: nxf1    Nomenclature History

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Previous Names: im:7156527, wu:fc12d06

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 21 Mapping Details/Browsers
Description: Predicted to have RNA binding activity. Involved in mRNA transport. Predicted to localize to nucleus. Orthologous to several human genes including NXF1 (nuclear RNA export factor 1).
Genome Resources: Alliance (1),  Gene:323865 (1),  Ensembl(GRCz11):ENSDARG00000055076 (2)
GENE EXPRESSION
All Expression Data: 2 figures from 2 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:7156527]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Larval:Day 4 (96.0h-120.0h)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
hi3248Tg Transgenic Insertion Intron 1 Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la028334Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa23951 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa43658 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE
    Data: 2 figures from 2 publications
    Observed in:
    DISEASE ASSOCIATED WITH nxf1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH nxf1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process mRNA transport (more)
    Cellular Component cytoplasm (more)
    Molecular Function nucleic acid binding (more)
    GO Terms (all 8)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA nxf1-201 (1)    Ensembl 2466
    ncRNA nxf1-002 (1)    Ensembl 6461
    Browsers: NCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM nxf1 No data available
    MARKER RELATIONSHIPS
    nxf1 Contained in: [BAC] CH211-198K5 (1)
    nxf1 Encodes: [EST] fc12d06, IMAGE:7156527 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:XM_001923926 (1) 2544 nt
    Genomic GenBank:BX465841 (1) 190913 nt
    Select Tool
    Polypeptide UniProtKB:F1Q7H6 (1) 642 aa
    Sequence Information (all 18)
    ORTHOLOGY for nxf1 ( Chr: 21 )
    CITATIONS (29)