ZFIN ID: ZDB-GENE-030131-2581
Gene Name: Wolf-Hirschhorn syndrome candidate 1
Gene Symbol: whsc1

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Previous Names: fc12c04, si:rp71-77d7.2, wu:fc12c04, wu:fi20c01

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(Including Attributions)
Location: Chr: 13 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 9 figures from 3 publications
Directly Submitted Expression Data: 6 figures (20 images) from Thisse et al., 2004 [IMAGE:7158283]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Adult (90d-730d, breeding adult)
  brain, central nervous system, eye, fin (all 16) expand
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
scu1 Indel Unknown Unknown CRISPR
Targeting reagents: CRISPR1-whsc1 (1), MO1-whsc1 (1), MO2-whsc1 (1), MO3-whsc1 (1)
PHENOTYPE
Data: 4 figures from Yamada-Okabe et al., 2010
Observed in: bone development, brain, cartilage element, ceratobranchial cartilage (all 10) expand
DISEASE ASSOCIATED WITH whsc1 HUMAN ORTHOLOGNo data available
GENE ONTOLOGY
Ontology GO Term
Biological Process cartilage development (more)
Cellular Component nucleus (more)
Molecular Function histone-lysine N-methyltransferase activity (more)
GO Terms (all 10)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000313 (1)
  • InterPro:IPR001214 (1)
  • InterPro:IPR001965 (1)
  • InterPro:IPR003616 (1)
  • InterPro:IPR006560 (1)
  • InterPro:IPR011011 (1)
  • InterPro:IPR013083 (1)
  • InterPro:IPR019786 (1)
  • InterPro:IPR019787 (1)
  • PROSITE:PS01359 (1)
  • PROSITE:PS50016 (1)
  • PROSITE:PS50280 (1)
  • PROSITE:PS50812 (1)
  • PROSITE:PS50868 (1)
  • PROSITE:PS51215 (1)
  • Pfam:PF00628 (1)
  • Pfam:PF00855 (1)
  • Pfam:PF00856 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA whsc1-001 (1) 5357
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYSNo data available
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM whsc1 No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    whsc1Contained in: [BAC] CH211-195N12 (1) (order this), CH211-233A24 (1) (order this)
    whsc1Encodes: [EST] fc12c04, fi20c01, IMAGE:7158283 (1) (order this)
    [cDNA] MGC:198423 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001082551 (1) 5347bp
    Genomic GenBank:CR556722 (1) 205873bp Blast at MegaBLAST
    Polypeptide UniProtKB:B7ZVT1 (1) 1461aa
    Sequence Clusters UniGene:78031 (1)
    Sequence Information (all 44)
    OTHER whsc1 GENE PAGES
  • Gene:100000709 (1)
  • VEGA:OTTDARG00000023818 (1)
  • Ensembl(GRCz10):ENSDARG00000026225 (1)
  • ORTHOLOGY for whsc1 (Chr: 13)
    Species Symbol Chromosome Accession # Evidence
    Human WHSC1 4
  • Gene:7468
  • OMIM:602952
  • HGNC:12766
  • Amino acid sequence comparison (2)
    Conserved genome location (synteny) (1)
    Mouse Whsc1 5
  • MGI:1276574
  • Gene:107823
  • Amino acid sequence comparison (1)
    Conserved genome location (synteny) (1)
    Download Curated Orthology
    CITATIONS (20)