ZFIN ID: ZDB-GENE-030131-2576
Gene Name: transglutaminase 2b
Gene Symbol: tgm2b
Previous Names: fc12b04, wu:fc12b04, zgc:136700
Location: Chr: 6 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 8 figures from 2 publications
Directly Submitted Expression Data: 6 figures (1 image) from Thisse et al., 2005 [eu541]
Wild-type Stages, Structures: Segmentation:20-25 somites (19.0h-22.0h) to Adult (90d-730d, breeding adult)
  notochord, whole organism
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la015838Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa40619 Point Mutation Unknown Unknown ENU
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH tgm2b HUMAN ORTHOLOGNo data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process peptide cross-linking (more)
    Molecular Function metal ion binding (more)
    GO Terms (all 5)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001102 (1)
  • InterPro:IPR002931 (1)
  • InterPro:IPR008958 (1)
  • InterPro:IPR013783 (1)
  • InterPro:IPR014756 (1)
  • InterPro:IPR023608 (1)
  • Pfam:PF00868 (1)
  • Pfam:PF00927 (1)
  • Pfam:PF01841 (1)
  • EC:2.3.2.13 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA tgm2b-001 (1) 1648
    ncRNA tgm2b-002 (1) 1366
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYSNo data available
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM tgm2b No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    tgm2bContained in: [Fosmid] CH1073-441C13 (1) (order this)
    tgm2bEncodes: [EST] eu541 (1), fc12b04
    [cDNA] MGC:136700 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_212656 (1) 2479bp
    Genomic GenBank:CU634004 (1) 34760bp
    Select Tool
    Polypeptide UniProtKB:Q1ECX3 (1) 679aa
    Sequence Clusters UniGene:16524 (1)
    Sequence Information (all 19)
    OTHER tgm2b GENE PAGES
  • Gene:323856 (1)
  • VEGA:OTTDARG00000034659 (1)
  • Ensembl(GRCz10):ENSDARG00000074094 (1)
  • ORTHOLOGY for tgm2b (Chr: 6)
    Species Symbol Chromosome Accession # Evidence
    Human TGM2 20
  • Gene:7052
  • OMIM:190196
  • HGNC:11778
  • Amino acid sequence comparison (1)
    Conserved genome location (synteny) (1)
    Mouse Tgm2 2
  • MGI:98731
  • Gene:21817
  • Amino acid sequence comparison (1)
    Conserved genome location (synteny) (1)
    Download Curated Orthology
    CITATIONS (20)