ZFIN ID: ZDB-GENE-030131-2281
Gene Name: collagen, type IV, alpha 5 (Alport syndrome)
Gene Symbol: col4a5    Nomenclature History

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Previous Names: dragnet (1), drg, wu:fc02g11

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 7 Mapping Details/Browsers
Description: Predicted to have extracellular matrix structural constituent. Involved in axonogenesis and basement membrane organization. Predicted to localize to collagen type IV trimer and extracellular space. Is expressed in several structures, including digestive system; integument; nervous system; neural tube; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Alport syndrome and X-linked Alport syndrome. Orthologous to human COL4A5 (collagen type IV alpha 5 chain).
Genome Resources: Alliance (1),  Gene:323561 (1),  Ensembl(GRCz11):ENSDARG00000052063 (2)
DISEASE ASSOCIATED WITH col4a5 HUMAN ORTHOLOG
Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
X-linked Alport syndrome Alliance Alport syndrome 1, X-linked 301050
DISEASE ASSOCIATED WITH col4a5 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process axon extension involved in axon guidance (more)
Cellular Component collagen trimer (more)
Molecular Function extracellular matrix structural constituent (more)
GO Terms (all 9)
PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA col4a5-201 (1)    Ensembl 6451
Browsers: UCSCNCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM col4a5 No data available
MARKER RELATIONSHIPS
col4a5 Contained in: [BAC] CH211-34M5 (1), DKEY-249M16 (1) (order this)
col4a5 Encodes: [EST] eu2431 (1), fc02g11, IMAGE:6960791
col4a5 Has Artifact: [EST] fc12a01
SEQUENCE INFORMATION
Type Accession # Length (nt/aa) Analysis
RNA RefSeq:NM_001123230 (1) 4980 nt
Genomic GenBank:CR936978 (1) 75941 nt
Select Tool
Polypeptide UniProtKB:B0UXF7 (1) 1679 aa
Sequence Information (all 20)
ORTHOLOGY for col4a5 ( Chr: 7 )
CITATIONS (41)