ZFIN Gene: slc35c2

ZFIN ID: ZDB-GENE-030131-2202

ZFIN ID: ZDB-GENE-030131-2202

Gene Name:

solute carrier family 35 member C2

Gene Symbol:

slc35c2 Nomenclature History

Previous Names:

wu:fb99e07 (1), wu:fc49g11 (1), wu:fi09e02 (1), zgc:55285, zgc:77328 (1)

Gene Type:

protein_coding_gene

Location:

Chr: 23 Mapping Details/Browsers

Description:

Predicted to be involved in growth plate cartilage chondrocyte morphogenesis. Predicted to localize to collagen-containing extracellular matrix and extracellular space. Is expressed in neuromast. Orthologous to human SLC35C2 (solute carrier family 35 member C2).

Genome Resources:

Alliance (1), Gene:323482 (1), Ensembl(GRCz11):ENSDARG00000037517 (1)

GENE EXPRESSION
All Expression Data:	2 figures from 2 publications
Directly Submitted Expression Data:	1 figure (1 image) from Thisse et al., 2004 [MGC:55285]
Wild-type Stages, Structures:	Zygote:1-cell (0.0h-0.75h) to Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth)
	neuromast unspecified
High Throughput Expression:	GEO (1) Expression Atlas (1)

MUTATIONS AND SEQUENCE TARGETING REAGENTS

Allele	Type	Localization	Consequence	Mutagen	Suppliers
sa10366	Point Mutation	Unknown	Premature Stop	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa18513	Point Mutation	Unknown	Premature Stop	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa24303	Point Mutation	Unknown	Missense, Premature Stop	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa37676	Point Mutation	Unknown	Premature Stop	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa37677	Point Mutation	Unknown	Premature Stop	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa37678	Point Mutation	Unknown	Premature Stop	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa43958	Point Mutation	Unknown	Premature Stop	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa45794	Point Mutation	Unknown	Premature Stop	ENU	Zebrafish International Resource Center (ZIRC) (order this)

PHENOTYPE No data available

DISEASE ASSOCIATED WITH slc35c2 HUMAN ORTHOLOG No data available

DISEASE ASSOCIATED WITH slc35c2 VIA EXPERIMENTAL MODELS No data available

GENE ONTOLOGY

Ontology	GO Term
Cellular Component	integral component of membrane (more)

GO Terms (all 4)

PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available

TRANSCRIPTS
Type	Name	Length (nt)	Analysis
mRNA	slc35c2-202 (1)	2298	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	slc35c2-203 (1)	7430	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	slc35c2-205 (1)	838	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	slc35c2-004 (1)	714	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Browsers: UCSC, NCBI, Ensembl, ZFIN

INTERACTIONS AND PATHWAYS

ANTIBODIES No data available

PLASMIDS No data available

CONSTRUCTS WITH SEQUENCES FROM slc35c2 No data available

MARKER RELATIONSHIPS

slc35c2 Contained in:	[BAC] CH73-47M18 (1), CH211-104F13 (1), RP71-17I16 (1)
slc35c2 Encodes:	[EST] fb99e07, fc49g11, fi09e02 [cDNA] MGC:55285 (1), MGC:77328

SEQUENCE INFORMATION

Type	Accession #	Length (nt/aa)	Analysis
RNA	RefSeq:NM_212643 (1)	1871 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
Genomic	GenBank:CR352228 (1)	175139 nt	Select Tool MegaBLAST Ensembl
Polypeptide	UniProtKB:F1Q5U3 (1)	1897 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast

Sequence Information (all 31)

ORTHOLOGY for slc35c2 ( Chr: 23 )

CITATIONS (20)

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