header logo image header logo text
Downloads Login
Research
General Information
ZIRC
ZFIN ID: ZDB-GENE-030131-2193
Gene Name: PR domain containing 1a, with ZNF domain
Gene Symbol: prdm1a    Nomenclature History

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Names: nrd (1), prdm1, Blimp-1 (1), Blimp1 (1), narrowminded (1), U boot, u-boot (1), ubo, wu:fb99c12, zgc:91885

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 16 Mapping Details/Browsers
Description: Exhibits DNA-binding transcription factor activity. Involved in several processes, including embryonic pectoral fin morphogenesis; positive regulation of cell differentiation; and skeletal system morphogenesis. Predicted to localize to the cytoplasm and nucleus. Is expressed in several structures, including digestive system; ectoderm; fin bud; mesoderm; and nervous system. Orthologous to human PRDM1 (PR/SET domain 1).
Genome Resources: Alliance (1),  Gene:323473 (1),  Ensembl(GRCz11):ENSDARG00000002445 (2)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
m805 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • nl3 Point Mutation Unknown Unknown ENU
    prdm1a_unspecified Unspecified Unknown Unknown
    sa6407 Point Mutation Unknown Premature Stop ENU
    sa9796 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa22750 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • tp39 Point Mutation Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-prdm1a N/A 4
    MO2-prdm1a N/A 12
    MO3-prdm1a N/A 1
    DISEASE ASSOCIATED WITH prdm1a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH prdm1a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process negative regulation of transcription by RNA polymerase II (more)
    Cellular Component cytoplasm (more)
    Molecular Function DNA-binding transcription factor activity (more)
    GO Terms (all 27)
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA prdm1a-201 (1)    Ensembl 3694
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM prdm1a
    Construct Regulatory Regions Coding Sequences Species Tg Lines Publications
    Tg(-60prdm1a:EGFP) prdm1a EGFP Danio rerio 1 5
    Tg(hsp70l:prdm1a) hsp70l prdm1a Danio rerio 1 3
    TgPAC(prdm1a:EGFP) prdm1a EGFP Danio rerio 2 11
    MARKER RELATIONSHIPS
    prdm1a Contained in: [BAC] DKEY-11F5 (order this)
    prdm1a Encodes: [EST] fb99c12, IMAGE:7136589 (1) (order this)
    [cDNA] MGC:91885 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_199515 (1) 3700 bp
    Genomic GenBank:AL928573 (1) 244471 bp Blast at MegaBLAST
    Polypeptide UniProtKB:Q5MB23 (1) 776 aa
    Sequence Clusters UniGene:77773 (1)
    Sequence Information (all 22)
    ORTHOLOGY for prdm1a ( Chr: 16 )
    CITATIONS (111)