ZFIN ID: ZDB-GENE-030131-202
Gene Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 20
Gene Symbol: ddx20
Sequence Ontology ID : SO:0000704

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Previous Names: fb59a11, si:dkey-193l3.3, si:dkey-193l3.4, wu:fb16g08, wu:fb59a11

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(Including Attributions)
Location: Chr: 8 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have ATP binding activity, DNA binding activity, and helicase activity; predicted to be involved in spliceosomal snRNP assembly; predicted to localize to the SMN complex, SMN-Sm protein  ...
GENE EXPRESSION
All Expression Data: 2 figures from 2 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:7148383]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
hg105 Indel Unknown Unknown CRISPR
hg106 Small Deletion Unknown Unknown CRISPR
la010806Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa11042 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH ddx20 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH ddx20 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process spliceosomal snRNP assembly (more)
    Cellular Component cytosol (more)
    Molecular Function ATP binding (more)
    GO Terms (all 17)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000629 (1)
  • InterPro:IPR001650 (1)
  • InterPro:IPR011545 (1)
  • InterPro:IPR014001 (1)
  • InterPro:IPR014014 (1)
  • InterPro:IPR027417 (1)
  • PROSITE:PS00039 (1)
  • PROSITE:PS51192 (1)
  • PROSITE:PS51194 (1)
  • PROSITE:PS51195 (1)
  • Pfam:PF00270 (1)
  • Pfam:PF00271 (1)
  • EC:3.6.4.13 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA ddx20-003 (1) 649
    mRNA ddx20-202 (1) 2846
    ddx20-203 (1) 504
     Withdrawn Transcriptsextinct
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM ddx20 No data available
    MARKER RELATIONSHIPS
    ddx20Contained in: [BAC] DKEY-193L3 (1) (order this)
    ddx20Encodes: [EST] fb16g08, fb59a11, IMAGE:7148383 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001123323 (1) 2843bp
    Genomic GenBank:BX664742 (1) 215608bp Blast at MegaBLAST
    Polypeptide UniProtKB:A0A286Y8P8 (1) 811aa
    Sequence Clusters UniGene:34524 (1)
    Sequence Information (all 24)
    OTHER ddx20 GENE PAGES
  • Alliance (1)
  • Gene:556273 (1)
  • VEGA:OTTDARG00000026849 (1)
  • Ensembl(GRCz11):ENSDARG00000061204 (2)
  • ORTHOLOGY for ddx20 (Chr: 8)
    CITATIONS (28)