ZFIN ID: ZDB-GENE-030131-1699
Gene Name: chloride channel 3
Gene Symbol: clcn3    Nomenclature History

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Previous Names: fb78c02, wu:fb78c02

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 7 Mapping Details/Browsers
Description: Predicted to have chloride ion binding activity; solute:proton antiporter activity; and voltage-gated chloride channel activity. Predicted to be involved in chloride transport and transmembrane transport. Predicted to localize to Golgi apparatus; cytoplasmic vesicle; and integral component of plasma membrane. Is expressed in several structures, including eye; female organism; heart; liver; and pleuroperitoneal region. Orthologous to human CLCN3 (chloride voltage-gated channel 3).
Genome Resources: Alliance (1),  Gene:559340 (1),  Ensembl(GRCz11):ENSDARG00000003269 (1)
GENE EXPRESSION
All Expression Data: 2 figures from 2 publications
Wild-type Stages, Structures: Adult (90d-730d, breeding adult) to Adult (90d-730d, breeding adult)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
a251 Complex Unknown Unknown CRISPR
Sequence Targeting Reagents
Targeting Reagent Created Alleles Publications
CRISPR1-clcn3 1
CRISPR2-clcn3 1
CRISPR3-clcn3 1
CRISPR4-clcn3 1
DISEASE ASSOCIATED WITH clcn3 HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH clcn3 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process chloride transport (more)
Cellular Component integral component of membrane (more)
Molecular Function voltage-gated chloride channel activity (more)
GO Terms (all 16)
PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA clcn3-202 (1)    Ensembl 5596
clcn3-204 (1)    Ensembl 518
clcn3-205 (1)    Ensembl 2277
ncRNA clcn3-004 (1)    Ensembl 638
Browsers: NCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM clcn3 No data available
MARKER RELATIONSHIPS
clcn3 Contained in: [BAC] CH211-14J11 (1), CH211-42C5 (1)
clcn3 Encodes: [EST] fb78c02
SEQUENCE INFORMATION
Type Accession # Length (nt/aa) Analysis
RNA RefSeq:XM_005166345 (1) 3837 nt
Genomic GenBank:BX324230 (1) 179902 nt
Select Tool
Polypeptide UniProtKB:A0A140LGR0 (1) 874 aa
Sequence Information (all 47)
ORTHOLOGY for clcn3 ( Chr: 7 )
CITATIONS (19)