ZFIN ID: ZDB-GENE-030131-1473
Gene Name: ubiquitin protein ligase E3 component n-recognin 3
Gene Symbol: ubr3
Sequence Ontology ID : SO:0000704

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Names: fb72f06, wu:fb72f06, znf650 (1)

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Location: Chr: 9 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: Fig. S5 from Li et al., 2016
Wild-type Stages, Structures: Pharyngula:Prim-5 (24.0h-30.0h) to Pharyngula:Prim-5 (24.0h-30.0h)
  somite
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
b1250 Small Deletion Unknown Frameshift, Premature Stop CRISPR
b1251 Insertion Unknown Frameshift, Premature Stop CRISPR
sa2488 Point Mutation Unknown Premature Stop ENU
sa10176 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • European Zebrafish Resource Center (EZRC) (order this)
  • sa16003 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa17047 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • European Zebrafish Resource Center (EZRC) (order this)
  • sa34547 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • European Zebrafish Resource Center (EZRC) (order this)
  • Targeting reagents: CRISPR1-ubr3 (1), CRISPR2-ubr3 (1)
    PHENOTYPE
    Data: 2 figures from Li et al., 2016
    Observed in: immature eye, optic vesicle epithelium, Rohon-Beard neuron, somite (all 5) expand
    DISEASE ASSOCIATED WITH ubr3 HUMAN ORTHOLOGNo data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process eye morphogenesis (more)
    Cellular Component cytoplasm (more)
    Molecular Function ligase activity (more)
    GO Terms (all 10)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001841 (1)
  • InterPro:IPR003126 (1)
  • InterPro:IPR013083 (1)
  • PROSITE:PS50089 (1)
  • PROSITE:PS51157 (1)
  • Pfam:PF02207 (1)
  • EC:2.3.2.27 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA ubr3-001 (1) 3082
    ubr3-002 (1) 2473
    ncRNA ubr3-003 (1) 1073
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM ubr3 No data available
    MARKER RELATIONSHIPS
    ubr3Contained in: [Fosmid] CH1073-344M4 (1) (order this), CH1073-384O24 (1) (order this), CH1073-417C18 (1) (order this)
    ubr3Encodes: [EST] fb72f06
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_017357738 (1)
    Genomic GenBank:CU639483 (1) 31970bp
    Select Tool
    Polypeptide UniProtKB:F1QJX5 (1) 1863aa
    Sequence Clusters UniGene:158218 (1)
    Sequence Information (all 37)
    OTHER ubr3 GENE PAGES
  • Alliance (1)
  • Gene:553247 (1)
  • VEGA:OTTDARG00000032759 (1)
  • Ensembl(GRCz10):ENSDARG00000042508 (1)
  • ORTHOLOGY for ubr3 (Chr: 9)
    CITATIONS (18)