ZFIN ID: ZDB-GENE-030116-3
Gene Name: sec1 family domain containing 1
Gene Symbol: scfd1    Nomenclature History

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Previous Names: emm, emmental, si:busm1-234g15.2 (1), si:dz234g15.2, sly1

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 17 Mapping Details/Browsers
Description: Predicted to have syntaxin binding activity. Involved in several processes, including fin regeneration; glycoprotein transport; and skeletal system development. Predicted to localize to Golgi membrane and cytosol. Is expressed in digestive system; head; myotome; notochord; and pharyngeal arch. Orthologous to human SCFD1 (sec1 family domain containing 1).
Genome Resources: Alliance (1),  Gene:317732 (1),  Ensembl(GRCz11):ENSDARG00000000779 (2)
GENE EXPRESSION
All Expression Data: 4 figures from 3 publications
Wild-type Stages, Structures: Cleavage:32-cell (1.75h-2.0h) to Adult (90d-730d, breeding adult)
 
High Throughput Expression: GEO (1) Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
nju201Gt Transgenic Insertion Intron 1 Unknown DNA
sa23100 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa23101 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa42952 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa42953 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • zp2 Point Mutation Donor Splice Site Splicing Variant ENU
    Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-scfd1 N/A 1
    DISEASE ASSOCIATED WITH scfd1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH scfd1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process cartilage development (more)
    Cellular Component cytosol (more)
    Molecular Function syntaxin binding (more)
    GO Terms (all 12)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA scfd1-201 (1)    Ensembl 2124
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM scfd1
    Construct Regulatory Regions Coding Sequences Species Tg Lines Publications
    Tg(hsp70l:scfd1,cryaa:EGFP) cryaahsp70l EGFPscfd1 Danio rerio 1 1
    MARKER RELATIONSHIPS
    scfd1 Contained in: [BAC] DKEY-18B8 (1) (order this)
    [PAC] BUSM1-67D8 (1), BUSM1-234G15 (1)
    scfd1 Encodes: [cDNA] MGC:195291 (1), MGC:195297 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_182861 (1) 2158 nt
    Genomic GenBank:BX324186 (1) 153540 nt
    Select Tool
    Polypeptide UniProtKB:B3DKI8 (1) 632 aa
    Sequence Information (all 22)
    ORTHOLOGY for scfd1 ( Chr: 17 )
    CITATIONS (33)