ZFIN ID: ZDB-GENE-021231-2
Gene Name: TSR2 ribosome maturation factor
Gene Symbol: tsr2
Sequence Ontology ID : SO:0000704

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Previous Names: chunp6926, dt1p1a10l (1), un-named hi1116a, unm hi1116a, zgc:109784

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(Including Attributions)
Location: Chr: 8 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); orthologous to human TSR2 (TSR2, ribosome maturation factor).
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:109784]
  1 figure (1 image) from Thisse et al., 2004 [MGC:101078]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
hi1116aTg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE
    Data: 3 figures from 3 publications
    Observed in:
    DISEASE ASSOCIATED WITH tsr2 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    ?Diamond-Blackfan anemia 14 with mandibulofacial dysostosis 300946
    DISEASE ASSOCIATED WITH tsr2 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process rRNA processing (more)
    Cellular Component nucleus (more)
    GO Terms (all 3)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR019398 (1)
  • Pfam:PF10273 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA tsr2-002 (1) 1020
    mRNA tsr2-201 (1) 1132
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM tsr2 No data available
    MARKER RELATIONSHIPS
    tsr2Contained in: [BAC] CH211-109O5 (1) (order this)
    tsr2Encodes: [STS] chunp6926
    [cDNA] MGC:77105 (1) (order this), MGC:101078 (1) (order this), MGC:109784 (1) (order this), MGC:193042 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_173284 (1) 1160bp
    Genomic GenBank:CU928118 (1) 71603bp
    Select Tool
    Polypeptide UniProtKB:F1QR86 (1) 182aa
    Sequence Clusters UniGene:86792 (1)
    Sequence Information (all 33)
    OTHER tsr2 GENE PAGES
  • Alliance (1)
  • Gene:317639 (1)
  • VEGA:OTTDARG00000037235 (1)
  • Ensembl(GRCz11):ENSDARG00000005772 (2)
  • ORTHOLOGY for tsr2 (Chr: 8)
    CITATIONS (29)