ZFIN ID: ZDB-GENE-021125-1
Gene Name: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
Gene Symbol: smarca5
Sequence Ontology ID : SO:0000704

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Previous Names: chunp6878, fb26d12, fb49g04, im:7146484, SWI/SNF related, matrix associated, actin dependent regulator of chromatin A5, wu:fb26d12 (1), wu:fb49g04 (1), zgc:158434

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(Including Attributions)
Location: Chr: 1 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 4 figures from 3 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:7146484]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
  unspecified, whole organism
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
hi550Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa11295 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa14090 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa19604 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa32777 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • European Zebrafish Resource Center (EZRC) (order this)
  • zko1049a Small Deletion Unknown Unknown CRISPR
    zko1049b Small Deletion Unknown Unknown CRISPR
    Targeting reagents: MO1-smarca5 (1), MO2-smarca5 (1), MO3-smarca5 (1)
    PHENOTYPE
    Data: 4 figures from 4 publications
    Observed in: brain, cardiac ventricle, central nervous system, eye (all 10) expand
    DISEASE ASSOCIATED WITH smarca5 HUMAN ORTHOLOGNo data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process cardiac ventricle development (more)
    Cellular Component NURF complex (more)
    Molecular Function ATP binding (more)
    GO Terms (all 16)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000330 (1)
  • InterPro:IPR001005 (1)
  • InterPro:IPR001650 (1)
  • InterPro:IPR009057 (1)
  • InterPro:IPR014001 (1)
  • InterPro:IPR015194 (1)
  • InterPro:IPR015195 (1)
  • InterPro:IPR017884 (1)
  • InterPro:IPR027417 (1)
  • InterPro:IPR029915 (1)
  • PROSITE:PS51192 (1)
  • PROSITE:PS51194 (1)
  • PROSITE:PS51293 (1)
  • Pfam:PF00176 (1)
  • Pfam:PF00271 (1)
  • Pfam:PF09110 (1)
  • Pfam:PF09111 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA smarca5-001 (1) 3711
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM smarca5 No data available
    MARKER RELATIONSHIPS
    smarca5Contained in: [BAC] CH73-251A15 (1) (order this), DKEY-76A14 (1) (order this)
    smarca5Contains: [SNP] rs3727550 (1), rs3727551 (1), rs3727552 (1), rs3727553 (1), rs3727554 (1)
    smarca5Encodes: [EST] fb26d12, fb49g04, IMAGE:7146484 (1) (order this)
    [STS] chunp6878
    [cDNA] MGC:158434 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001081629 (1) 3711bp
    Genomic GenBank:BX470255 (1) 203708bp Blast at MegaBLAST
    Polypeptide UniProtKB:B8A552 (1) 1035aa
    Sequence Clusters UniGene:76168 (1)
    Sequence Information (all 24)
    OTHER smarca5 GENE PAGES
  • Alliance (1)
  • Gene:282615 (1)
  • VEGA:OTTDARG00000027087 (1)
  • Ensembl(GRCz10):ENSDARG00000052348 (1)
  • ORTHOLOGY for smarca5 (Chr: 1)
    CITATIONS (36)