ZFIN ID: ZDB-GENE-020419-13
Gene Name: serrate RNA effector molecule homolog (Arabidopsis)
Gene Symbol: srrt    Nomenclature History

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Previous Names: ars2, CHUNP6881, zgc:92060

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 5 Mapping Details/Browsers
Description: Predicted to be involved in cell population proliferation and primary miRNA processing. Predicted to localize to the cytoplasm and nucleoplasm. Orthologous to human SRRT (serrate, RNA effector molecule).
Genome Resources: Alliance (1),  Gene:192311 (1),  Ensembl(GRCz11):ENSDARG00000017762 (1)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:92060]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
hi591Tg Transgenic Insertion Intron 1 Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • hi2249Tg Transgenic Insertion Intron 1 Unknown DNA
    hi2765Tg Transgenic Insertion Intron 1 Unknown DNA
    la015691Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa20334 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • DISEASE ASSOCIATED WITH srrt HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH srrt VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process primary miRNA processing (more)
    Cellular Component cytoplasm (more)
    GO Terms (all 8)
    PROTEIN FAMILIES, DOMAINS AND SITES
    Type InterPro ID Name
    Domain IPR007042 SERRATE/Ars2 , C-terminal
    Homologous_superfamily IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
    Domain IPR021933 SERRATE/Ars2, N-terminal
    Family IPR039727 SERRATE/Ars2
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA srrt-201 (1)    Ensembl 3030
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM srrt No data available
    MARKER RELATIONSHIPS
    srrt Contained in: [BAC] CH211-283G2 (1)
    srrt Encodes: [STS] chunp6881
    [cDNA] MGC:92060 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_173238 (1) 3076 bp
    Genomic GenBank:CR407559 (1) 149707 bp
    Select Tool
    Polypeptide UniProtKB:A0A0R4IM33 (1) 914 aa
    Sequence Information (all 17)
    ORTHOLOGY for srrt ( Chr: 5 )
    CITATIONS (32)