ZFIN ID: ZDB-GENE-010724-7
Gene Name: coatomer protein complex, subunit beta 2
Gene Symbol: copb2
Sequence Ontology ID : SO:0000704

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Previous Names: dop, dopey, sb:cb121, wu:fb30f06

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(Including Attributions)
Location: Chr: 2 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 8 figures from 2 publications
Directly Submitted Expression Data: 6 figures (18 images) from Thisse et al., 2001 [cb121]
Wild-type Stages, Structures: Gastrula:50%-epiboly (5.25h-5.66h) to Hatching:Long-pec (48.0h-60.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la023673Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • m341 Point Mutation Unknown Unknown ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • m475 Unknown Unknown Unknown ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa39897 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • tm18a Unknown Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • tr222b Unknown Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • tz226 Unknown Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Targeting reagents:
    PHENOTYPE
    Data: 14 figures from 5 publications
    Observed in:
    DISEASE ASSOCIATED WITH copb2 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    primary autosomal recessive microcephaly 19 ?Microcephaly 19, primary, autosomal recessive 617800
    DISEASE ASSOCIATED WITH copb2 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process notochord development (more)
    Cellular Component cytoplasm (more)
    Molecular Function structural molecule activity (more)
    GO Terms (all 16)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001680 (1)
  • InterPro:IPR006692 (1)
  • InterPro:IPR011044 (1)
  • InterPro:IPR015943 (1)
  • InterPro:IPR016453 (1)
  • InterPro:IPR017986 (1)
  • InterPro:IPR020472 (1)
  • InterPro:IPR036322 (1)
  • PROSITE:PS50082 (1)
  • PROSITE:PS50294 (1)
  • Pfam:PF00400 (1)
  • Pfam:PF04053 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA copb2-001 (1) 3218
    ncRNA copb2-002 (1) 631
    copb2-003 (1) 1024
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM copb2 No data available
    MARKER RELATIONSHIPS
    copb2Contained in: [BAC] CH211-119O8 (1) (order this)
    copb2Contains: [SNP] rs3727648 (1), rs3727649 (1), rs3727650 (1)
    copb2Encodes: [EST] cb121 (1), fb30f06 (1), wz178
    [cDNA] MGC:175021 (1) (order this), MGC:194073 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001001940 (1) 3170bp
    Genomic GenBank:AL953896 (1) 158018bp
    Select Tool
    Polypeptide UniProtKB:A0A2R8RUW2 (1) 981aa
    Sequence Clusters UniGene:14625 (1)
    Sequence Information (all 25)
    OTHER copb2 GENE PAGES
  • Alliance (1)
  • Gene:114454 (1)
  • VEGA:OTTDARG00000019929 (1)
  • ORTHOLOGY for copb2 (Chr: 2)
    CITATIONS (42)