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ZIRC
ZFIN ID: ZDB-GENE-010716-2
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Gene Name: iroquois homeobox 5a
Gene Symbol: irx5a
Sequence Ontology ID : SO:0000704

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Previous Names: iro5 (1), ziro5 (1)

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(Including Attributions)
Location: Chr: 7 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have sequence-specific DNA binding activity; involved in embryonic skeletal joint development and regulation of chondrocyte differentiation; predicted to localize to the nucleus;  ...
GENE EXPRESSION
All Expression Data: 20 figures from 12 publications
Directly Submitted Expression Data: 6 figures (15 images) from Thisse et al., 2004 [MGC:92554]
Wild-type Stages, Structures: Gastrula:75%-epiboly (8.0h-9.0h) to Larval:Protruding-mouth (72.0h-96.0h, 3.5mm)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
el574 Small Deletion Unknown Unknown TALEN
el576 Small Deletion Unknown Unknown TALEN
sa17095 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • Targeting reagents:
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH irx5a HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    Hamamy syndrome 611174
    DISEASE ASSOCIATED WITH irx5a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process embryonic skeletal joint development (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001356 (1)
  • InterPro:IPR003893 (1)
  • InterPro:IPR008422 (1)
  • InterPro:IPR009057 (1)
  • InterPro:IPR017970 (1)
    		•
  • PROSITE:PS00027 (1)
  • PROSITE:PS50071 (1)
    		•
  • Pfam:PF05920 (1)
    		•
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA irx5a-201 (1) 1927
    Select Tool
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM irx5a No data available
    MARKER RELATIONSHIPS
    irx5aContained in: [BAC] CH211-191G22 (1) (order this), DKEY-224N5 (1) (order this)
    irx5aEncodes: [cDNA] MGC:92554 (1) (order this), MGC:191168 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001045227 (1) 1922bp
    Select Tool
    Genomic GenBank:BX005202 (1) 220733bp Blast at MegaBLAST
    Polypeptide UniProtKB:Q1LXU5 (1) 446aa
    Select Tool
    Sequence Clusters UniGene:83684 (1)
    Sequence Information (all 28)
    OTHER irx5a GENE PAGES
  • Alliance (1)
  • Gene:573346 (1)
  • VEGA:OTTDARG00000011623 (1)
  • Ensembl(GRCz11):ENSDARG00000034043 (2)
    • ORTHOLOGY for irx5a (Chr: 7)
    CITATIONS (35)