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ZIRC
ZFIN ID: ZDB-GENE-010430-2
Gene Name: VPS52 subunit of GARP complex
Gene Symbol: vps52
Sequence Ontology ID : SO:0000704

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Previous Names: fb94c11, sacm2l (1), wu:fb94c11 (1)

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(Including Attributions)
Location: Chr: 19 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have Rab GTPase binding activity and syntaxin binding activity. Predicted to be involved in Golgi to vacuole transport; endosomal transport; and lysosomal transport. Predicted to  ...
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:7148658]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa4801 Point Mutation Unknown Splice Site ENU
sa18372 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa23494 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa43253 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH vps52 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH vps52 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process endocytic recycling (more)
    Cellular Component GARP complex (more)
    Molecular Function Rab GTPase binding (more)
    GO Terms (all 7)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR007258 (1)
  • Pfam:PF04129 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA vps52-003 (1) 794
    mRNA vps52-202 (1) 2450
     Withdrawn Transcriptsextinct
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM vps52 No data available
    MARKER RELATIONSHIPS
    vps52Contained in: [BAC] CH73-389O5 (1) (order this), DKEY-179E8 (1) (order this)
    vps52Encodes: [EST] fb94c11, IMAGE:7148658 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_009294179 (1)
    Genomic GenBank:BX957299 168017bp
    Select Tool
    Polypeptide UniProtKB:A0A0R4IY52 (1) 724aa
    Sequence Clusters UniGene:132370 (1)
    Sequence Information (all 32)
    ORTHOLOGY for vps52 (Chr: 19)
    CITATIONS (14)