ZFIN ID: ZDB-GENE-010412-1
Gene Name: SIX homeobox 2a
Gene Symbol: six2a
Sequence Ontology ID : SO:0000704

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Names: six2.1, wu:fj04e08, zgc:91945

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Location: Chr: 13 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
GENE EXPRESSION
All Expression Data: 9 figures from 3 publications
Directly Submitted Expression Data: 6 figures (13 images) from Thisse et al., 2004 [MGC:91945]
Wild-type Stages, Structures: Segmentation:1-4 somites (10.33h-11.66h) to Hatching:Long-pec (48.0h-60.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Targeting reagents:
PHENOTYPE
Data: 3 figures from Weber et al., 2008
Observed in:
DISEASE ASSOCIATED WITH six2a HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH six2a VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process pronephros development (more)
Cellular Component nucleus (more)
Molecular Function DNA binding (more)
GO Terms (all 5)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001356 (1)
  • InterPro:IPR009057 (1)
  • InterPro:IPR017970 (1)
  • InterPro:IPR031701 (1)
  • PROSITE:PS00027 (1)
  • PROSITE:PS50071 (1)
  • Pfam:PF00046 (1)
  • Pfam:PF16878 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA six2a-001 (1) 1609
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM six2a No data available
    MARKER RELATIONSHIPS
    six2aContained in: [BAC] DKEY-103L3 (1) (order this)
    six2aEncodes: [EST] fj04e08 (1)
    [cDNA] MGC:91945 (1) (order this), MGC:191825 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131783 (1) 1635bp
    Genomic GenBank:BX537274 (1) 151298bp
    Select Tool
    Polypeptide UniProtKB:Q98TH1 (1) 288aa
    Sequence Clusters UniGene:8955 (1)
    Sequence Information (all 17)
    OTHER six2a GENE PAGES
  • Alliance (1)
  • Gene:83415 (1)
  • VEGA:OTTDARG00000020675 (1)
  • ORTHOLOGY for six2a (Chr: 13)
    CITATIONS (25)